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Sequence alignment

Genome Assembly Has a Major Impact on Gene Content: A Comparison of Annotation in Two Bos Taurus Assemblies

Liliana Florea, Alexander Souvorov, Theodore S. Kalbfleisch, Steven L. Salzberg

published 22 Jun 2011

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The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation Sequencing

Da Cheng Hao, GuangBo Ge, PeiGen Xiao, YanYan Zhang, Ling Yang

published 22 Jun 2011

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Poly (A)⁺ Transcriptome Assessment of ERBB2-Induced Alterations in Breast Cell Lines

Dirce Maria Carraro, Elisa Napolitano Ferreira, Gustavo de Campos Molina, Renato David Puga, Eduardo Fernandes Abrantes, Adriana Priscila Trapé, Bedrich L. Ekhardt, Diana Noronha Nunes, Maria Mitzi Brentani, Wadih Arap, Renata Pasqualini, Helena Brentani, Emmanuel Dias-Neto, Ricardo Renzo Brentani

published 22 Jun 2011

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The Utility of High-Resolution Melting Analysis of SNP Nucleated PCR Amplicons—An MLST Based Staphylococcus aureus Typing Scheme

Rachael A. Lilliebridge, Steven Y.C. Tong, Philip M. Giffard, Deborah C. Holt

published 22 Jun 2011

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Informational Gene Phylogenies Do Not Support a Fourth Domain of Life for Nucleocytoplasmic Large DNA Viruses

Tom A. Williams, T. Martin Embley, Eva Heinz

published 16 Jun 2011

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Predicting Protein Folds with Fold-Specific PSSM Libraries

Yoojin Hong, Sree Vamsee Chintapalli, Kyung Dae Ko, Gaurav Bhardwaj, Zhenhai Zhang, Damian van Rossum, Randen L. Patterson

published 16 Jun 2011

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Phylogeny of Parasitic Parabasalia and Free-Living Relatives Inferred from Conventional Markers vs. Rpb1, a Single-Copy Gene

Shehre-Banoo Malik, Cynthia D. Brochu, Ivana Bilic, Jing Yuan, Michael Hess, John M. Logsdon Jr, Jane M. Carlton

published 09 Jun 2011

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Defining Reference Sequences for Nocardia Species by Similarity and Clustering Analyses of 16S rRNA Gene Sequence Data

Manal Helal, Fanrong Kong, Sharon C. A. Chen, Michael Bain, Richard Christen, Vitali Sintchenko

published 08 Jun 2011

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Mouse Transcobalamin Has Features Resembling both Human Transcobalamin and Haptocorrin

Katrine Hygum, Dorte L. Lildballe, Eva H. Greibe, Anne L. Morkbak, Steen S. Poulsen, Boe S. Sorensen, Torben E. Petersen, Ebba Nexo

published 31 May 2011

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High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)

Yun-Jie Zhang, Peng-Fei Ma, De-Zhu Li

published 31 May 2011

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Identification of Antifreeze Proteins and Their Functional Residues by Support Vector Machine and Genetic Algorithms based on n-Peptide Compositions

Chin-Sheng Yu, Chih-Hao Lu

published 31 May 2011

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Markov Models of Amino Acid Substitution to Study Proteins with Intrinsically Disordered Regions

Adam M. Szalkowski, Maria Anisimova

published 27 May 2011

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Common Peptides Study of Aminoacyl-tRNA Synthetases

Assaf Gottlieb, Milana Frenkel-Morgenstern, Mark Safro, David Horn

published 27 May 2011

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