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Sequence alignment

Explicit-Duration Hidden Markov Model Inference of UP-DOWN States from Continuous Signals

James M. McFarland, Thomas T. G. Hahn, Mayank R. Mehta

The Significance of the ProtDeform Score for Structure Prediction and Alignment

Jairo Rocha, Ricardo Alberich

Evolutionary Analysis of Novel Serine Proteases in the Venom Gland Transcriptome of Bitis gabonica rhinoceros

Sakthivel Vaiyapuri, Simon C. Wagstaff, [ ... ], E. Gail Hutchinson

Improved Phylogenetic Analyses Corroborate a Plausible Position of Martialis heureka in the Ant Tree of Life

Patrick Kück, Francisco Hita Garcia, Bernhard Misof, Karen Meusemann

Identification of a Classical Bipartite Nuclear Localization Signal in the Drosophila TEA/ATTS Protein Scalloped

Adam C. Magico, John B. Bell

Genome Assembly Has a Major Impact on Gene Content: A Comparison of Annotation in Two Bos Taurus Assemblies

Liliana Florea, Alexander Souvorov, Theodore S. Kalbfleisch, Steven L. Salzberg

The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation Sequencing

Da Cheng Hao, GuangBo Ge, [ ... ], Ling Yang

Poly (A)⁺ Transcriptome Assessment of ERBB2-Induced Alterations in Breast Cell Lines

Dirce Maria Carraro, Elisa Napolitano Ferreira, [ ... ], Ricardo Renzo Brentani

The Utility of High-Resolution Melting Analysis of SNP Nucleated PCR Amplicons—An MLST Based Staphylococcus aureus Typing Scheme

Rachael A. Lilliebridge, Steven Y.C. Tong, Philip M. Giffard, Deborah C. Holt

Informational Gene Phylogenies Do Not Support a Fourth Domain of Life for Nucleocytoplasmic Large DNA Viruses

Tom A. Williams, T. Martin Embley, Eva Heinz

Predicting Protein Folds with Fold-Specific PSSM Libraries

Yoojin Hong, Sree Vamsee Chintapalli, [ ... ], Randen L. Patterson

Phylogeny of Parasitic Parabasalia and Free-Living Relatives Inferred from Conventional Markers vs. Rpb1, a Single-Copy Gene

Shehre-Banoo Malik, Cynthia D. Brochu, [ ... ], Jane M. Carlton

Defining Reference Sequences for Nocardia Species by Similarity and Clustering Analyses of 16S rRNA Gene Sequence Data

Manal Helal, Fanrong Kong, [ ... ], Vitali Sintchenko

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