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Sequence alignment

A Phylogenetic Analysis of the Globins in Fungi

David Hoogewijs, Sylvia Dewilde, [ ... ], Serge N. Vinogradov

Evaluating Characteristics of De Novo Assembly Software on 454 Transcriptome Data: A Simulation Approach

Marvin Mundry, Erich Bornberg-Bauer, Michael Sammeth, Philine G. D. Feulner

Primitive Duplicate Hox Clusters in the European Eel's Genome

Christiaan V. Henkel, Erik Burgerhout, [ ... ], Guido E. E. J. M. van den Thillart

Identification of Genome-Wide Variations among Three Elite Restorer Lines for Hybrid-Rice

Shuangcheng Li, Shiquan Wang, [ ... ], Ping Li

First Dating of a Recombination Event in Mammalian Tick-Borne Flaviviruses

Yann Bertrand, Mats Töpel, [ ... ], Magnus Johansson

A Format for Phylogenetic Placements

Frederick A. Matsen, Noah G. Hoffman, Aaron Gallagher, Alexandros Stamatakis

Diversity Measures in Environmental Sequences Are Highly Dependent on Alignment Quality—Data from ITS and New LSU Primers Targeting Basidiomycetes

Dirk Krüger, Danuta Kapturska, [ ... ], Tesfaye Wubet

Challenges in Whole Exome Sequencing: An Example from Hereditary Deafness

Asli Sirmaci, Yvonne J. K. Edwards, Hatice Akay, Mustafa Tekin

A Novel Framework for the Comparative Analysis of Biological Networks

Roland A. Pache, Patrick Aloy

DNA Barcoding the Dioscorea in China, a Vital Group in the Evolution of Monocotyledon: Use of matK Gene for Species Discrimination

Xiao-Qin Sun, Ying-Jie Zhu, [ ... ], Yue-Yu Hang

Independent Recruitment of a Flavin-Dependent Monooxygenase for Safe Accumulation of Sequestered Pyrrolizidine Alkaloids in Grasshoppers and Moths

Linzhu Wang, Till Beuerle, James Timbilla, Dietrich Ober

Optimizing a Massive Parallel Sequencing Workflow for Quantitative miRNA Expression Analysis

Francesca Cordero, Marco Beccuti, [ ... ], Raffaele A. Calogero

Molecular Evolution of the Deuterolysin (M35) Family Genes in Coccidioides

Juan Li, Li Yu, Yanmei Tian, Ke-Qin Zhang

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