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Sequence alignment

COPS: A Sensitive and Accurate Tool for Detecting Somatic Copy Number Alterations Using Short-Read Sequence Data from Paired Samples

Neeraja M. Krishnan, Prakhar Gaur, Rakshit Chaudhary, Arjun A. Rao, Binay Panda

published 22 Oct 2012

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Probing the Putative Active Site of YjdL: An Unusual Proton-Coupled Oligopeptide Transporter from E. coli

Johanne Mørch Jensen, Fouzia Ismat, Gerda Szakonyi, Moazur Rahman, Osman Mirza

published 22 Oct 2012

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ExpI and PhzI Are Descendants of the Long Lost Cognate Signal Synthase for SdiA

Anice Sabag-Daigle, Brian M. M. Ahmer

published 17 Oct 2012

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MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Jens Roat Kultima, Shinichi Sunagawa, Junhua Li, Weineng Chen, Hua Chen, Daniel R. Mende, Manimozhiyan Arumugam, Qi Pan, Binghang Liu, Junjie Qin, Jun Wang, Peer Bork

published 17 Oct 2012

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Accurate Simulation and Detection of Coevolution Signals in Multiple Sequence Alignments

Sharon H. Ackerman, Elisabeth R. Tillier, Domenico L. Gatti

published 16 Oct 2012

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A Hybrid Distance Measure for Clustering Expressed Sequence Tags Originating from the Same Gene Family

Keng-Hoong Ng, Chin-Kuan Ho, Somnuk Phon-Amnuaisuk

published 11 Oct 2012

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lociNGS: A Lightweight Alternative for Assessing Suitability of Next-Generation Loci for Evolutionary Analysis

Sarah M. Hird

published 10 Oct 2012

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Hypoxylon pulicicidum sp. nov. (Ascomycota, Xylariales), a Pantropical Insecticide-Producing Endophyte

Gerald F. Bills, Victor González-Menéndez, Jesús Martín, Gonzalo Platas, Jacques Fournier, Derek Peršoh, Marc Stadler

published 09 Oct 2012

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Evolutionary History of Contagious Bovine Pleuropneumonia Using Next Generation Sequencing of Mycoplasma mycoides Subsp. mycoides “Small Colony”

Virginie Dupuy, Lucía Manso-Silván, Valérie Barbe, Patricia Thebault, Emilie Dordet-Frisoni, Christine Citti, François Poumarat, Alain Blanchard, Marc Breton, Pascal Sirand-Pugnet, François Thiaucourt

published 08 Oct 2012

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Whole Genome Sequencing of Mutation Accumulation Lines Reveals a Low Mutation Rate in the Social Amoeba Dictyostelium discoideum

Gerda Saxer, Paul Havlak, Sara A. Fox, Michael A. Quance, Sharu Gupta, Yuriy Fofanov, Joan E. Strassmann, David C. Queller

published 08 Oct 2012

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Predicting the Functional Effect of Amino Acid Substitutions and Indels

Yongwook Choi, Gregory E. Sims, Sean Murphy, Jason R. Miller, Agnes P. Chan

published 08 Oct 2012

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Improving PacBio Long Read Accuracy by Short Read Alignment

Kin Fai Au, Jason G. Underwood, Lawrence Lee, Wing Hung Wong

published 04 Oct 2012

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A Statistical Framework for Accurate Taxonomic Assignment of Metagenomic Sequencing Reads

Hongmei Jiang, Lingling An, Simon M. Lin, Gang Feng, Yuqing Qiu

published 01 Oct 2012

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