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Sequence alignment

COPS: A Sensitive and Accurate Tool for Detecting Somatic Copy Number Alterations Using Short-Read Sequence Data from Paired Samples

Neeraja M. Krishnan, Prakhar Gaur, [ ... ], Binay Panda

Probing the Putative Active Site of YjdL: An Unusual Proton-Coupled Oligopeptide Transporter from E. coli

Johanne Mørch Jensen, Fouzia Ismat, [ ... ], Osman Mirza

ExpI and PhzI Are Descendants of the Long Lost Cognate Signal Synthase for SdiA

Anice Sabag-Daigle, Brian M. M. Ahmer

MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Jens Roat Kultima, Shinichi Sunagawa, [ ... ], Peer Bork

Accurate Simulation and Detection of Coevolution Signals in Multiple Sequence Alignments

Sharon H. Ackerman, Elisabeth R. Tillier, Domenico L. Gatti

A Hybrid Distance Measure for Clustering Expressed Sequence Tags Originating from the Same Gene Family

Keng-Hoong Ng, Chin-Kuan Ho, Somnuk Phon-Amnuaisuk

lociNGS: A Lightweight Alternative for Assessing Suitability of Next-Generation Loci for Evolutionary Analysis

Sarah M. Hird

Hypoxylon pulicicidum sp. nov. (Ascomycota, Xylariales), a Pantropical Insecticide-Producing Endophyte

Gerald F. Bills, Victor González-Menéndez, [ ... ], Marc Stadler

Evolutionary History of Contagious Bovine Pleuropneumonia Using Next Generation Sequencing of Mycoplasma mycoides Subsp. mycoides “Small Colony”

Virginie Dupuy, Lucía Manso-Silván, [ ... ], François Thiaucourt

Whole Genome Sequencing of Mutation Accumulation Lines Reveals a Low Mutation Rate in the Social Amoeba Dictyostelium discoideum

Gerda Saxer, Paul Havlak, [ ... ], David C. Queller

Predicting the Functional Effect of Amino Acid Substitutions and Indels

Yongwook Choi, Gregory E. Sims, [ ... ], Agnes P. Chan

Improving PacBio Long Read Accuracy by Short Read Alignment

Kin Fai Au, Jason G. Underwood, Lawrence Lee, Wing Hung Wong

A Statistical Framework for Accurate Taxonomic Assignment of Metagenomic Sequencing Reads

Hongmei Jiang, Lingling An, [ ... ], Yuqing Qiu

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