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Sequence alignment

Searching Remote Homology with Spectral Clustering with Symmetry in Neighborhood Cluster Kernels

Ujjwal Maulik, Anasua Sarkar

Increasing Sequence Search Sensitivity with Transitive Alignments

Ketil Malde, Tomasz Furmanek

The N-Terminal Intrinsically Disordered Domain of Mgm101p Is Localized to the Mitochondrial Nucleoid

David C. Hayward, Zsuzsanna Dosztányi, George Desmond Clark-Walker

Iteratively Refined Guide Trees Help Improving Alignment and Phylogenetic Inference in the Mushroom Family Bolbitiaceae

Annamária Tóth, Anton Hausknecht, [ ... ], László G. Nagy

Rapid Focused Sequencing: A Multiplexed Assay for Simultaneous Detection and Strain Typing of Bacillus anthracis, Francisella tularensis, and Yersinia pestis

Rosemary S. Turingan, Hans-Ulrich Thomann, [ ... ], Richard F. Selden

The Evolutionary History of Amino Acid Variations Mediating Increased Resistance of S. aureus Identifies Reversion Mutations in Metabolic Regulators

Mia D. Champion, Vanessa Gray, Carl Eberhard, Sudhir Kumar

Stallion Sperm Transcriptome Comprises Functionally Coherent Coding and Regulatory RNAs as Revealed by Microarray Analysis and RNA-seq

Pranab J. Das, Fiona McCarthy, [ ... ], Terje Raudsepp

Multi-Species Comparative Analysis of the Equine ACE Gene Identifies a Highly Conserved Potential Transcription Factor Binding Site in Intron 16

Natasha A. Hamilton, Imke Tammen, Herman W. Raadsma

Phylogenomics and Molecular Signatures for Species from the Plant Pathogen-Containing Order Xanthomonadales

Hafiz Sohail Naushad, Radhey S. Gupta

Conservation and Sex-Specific Splicing of the transformer Gene in the Calliphorids Cochliomyia hominivorax, Cochliomyia macellaria and Lucilia sericata

Fang Li, Steven P. Vensko II, Esther J. Belikoff, Maxwell J. Scott

Dramatic Structural Changes Resulting from the Loss of a Crucial Hydrogen Bond in the Hinge Region Involved in C-Terminal Helix Swapping in SurE: A Survival Protein from Salmonella typhimurium

Yamuna Kalyani Mathiharan, Anju Pappachan, H. S. Savithri, Mathur R. N. Murthy

Comparison of Sequencing Platforms for Single Nucleotide Variant Calls in a Human Sample

Aakrosh Ratan, Webb Miller, [ ... ], Stephan C. Schuster

Dinitrogen Fixation Is Restricted to the Terminal Heterocysts in the Invasive Cyanobacterium Cylindrospermopsis raciborskii CS-505

Álvaro M. Plominsky, John Larsson, [ ... ], Mónica Vásquez

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