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Sequence alignment

PSimScan: Algorithm and Utility for Fast Protein Similarity Search

Anna Kaznadzey, Natalia Alexandrova, Vladimir Novichkov, Denis Kaznadzey

published 07 Mar 2013

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ORFcor: Identifying and Accommodating ORF Prediction Inconsistencies for Phylogenetic Analysis

Jonathan L. Klassen, Cameron R. Currie

published 06 Mar 2013

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Elucidation of the RNA Recognition Code for Pentatricopeptide Repeat Proteins Involved in Organelle RNA Editing in Plants

Yusuke Yagi, Shimpei Hayashi, Keiko Kobayashi, Takashi Hirayama, Takahiro Nakamura

published 05 Mar 2013

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Alignment of Helical Membrane Protein Sequences Using AlignMe

Marcus Stamm, René Staritzbichler, Kamil Khafizov, Lucy R. Forrest

published 04 Mar 2013

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TagGD: Fast and Accurate Software for DNA Tag Generation and Demultiplexing

Paul Igor Costea, Joakim Lundeberg, Pelin Akan

published 04 Mar 2013

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Digging the New York City Skyline: Soil Fungal Communities in Green Roofs and City Parks

Krista L. McGuire, Sara G. Payne, Matthew I. Palmer, Caitlyn M. Gillikin, Dominique Keefe, Su Jin Kim, Seren M. Gedallovich, Julia Discenza, Ramya Rangamannar, Jennifer A. Koshner, Audrey L. Massmann, Giulia Orazi, Adam Essene, Jonathan W. Leff, Noah Fierer

published 01 Mar 2013

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PyroClean: Denoising Pyrosequences from Protein-Coding Amplicons for the Recovery of Interspecific and Intraspecific Genetic Variation

Ricardo Ramirez-Gonzalez, Douglas W. Yu, Catharine Bruce, Darren Heavens, Mario Caccamo, Brent C. Emerson

published 01 Mar 2013

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Distinguishing Body Lice from Head Lice by Multiplex Real-Time PCR Analysis of the Phum_PHUM540560 Gene

Rezak Drali, Amina Boutellis, Didier Raoult, Jean Marc Rolain, Philippe Brouqui

published 28 Feb 2013

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EM Structure of the Ectodomain of Integrin CD11b/CD18 and Localization of Its Ligand-Binding Site Relative to the Plasma Membrane

Brian D. Adair, Jian-Ping Xiong, José Luis Alonso, Bradley T. Hyman, M. Amin Arnaout

published 28 Feb 2013

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Towards Improved Quality of GPCR Models by Usage of Multiple Templates and Profile-Profile Comparison

Dorota Latek, Pawel Pasznik, Teresa Carlomagno, Slawomir Filipek

published 28 Feb 2013

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De Novo Transcriptome Assembly (NGS) of Curcuma longa L. Rhizome Reveals Novel Transcripts Related to Anticancer and Antimalarial Terpenoids

Ramasamy S. Annadurai, Ramprasad Neethiraj, Vasanthan Jayakumar, Anand C. Damodaran, Sudha Narayana Rao, Mohan A. V. S. K. Katta, Sreeja Gopinathan, Santosh Prasad Sarma, Vanitha Senthilkumar, Vidya Niranjan, Ashok Gopinath, Raja C. Mugasimangalam

published 28 Feb 2013

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Metagenomic Detection of Viral Pathogens in Spanish Honeybees: Co-Infection by Aphid Lethal Paralysis, Israel Acute Paralysis and Lake Sinai Viruses

Fredrik Granberg, Marina Vicente-Rubiano, Consuelo Rubio-Guerri, Oskar E. Karlsson, Deborah Kukielka, Sándor Belák, José Manuel Sánchez-Vizcaíno

published 27 Feb 2013

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Bidirectional Promoters as Important Drivers for the Emergence of Species-Specific Transcripts

Valer Gotea, Hanna M. Petrykowska, Laura Elnitski

published 27 Feb 2013

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