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Sequence alignment

A Multi-Platform Draft de novo Genome Assembly and Comparative Analysis for the Scarlet Macaw (Ara macao)

Christopher M. Seabury, Scot E. Dowd, Paul M. Seabury, Terje Raudsepp, Donald J. Brightsmith, Poul Liboriussen, Yvette Halley, Colleen A. Fisher, Elaine Owens, Ganesh Viswanathan, Ian R. Tizard

published 08 May 2013

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Fine De Novo Sequencing of a Fungal Genome Using only SOLiD Short Read Data: Verification on Aspergillus oryzae RIB40

Myco Umemura, Yoshinori Koyama, Itaru Takeda, Hiroko Hagiwara, Tsutomu Ikegami, Hideaki Koike, Masayuki Machida

published 07 May 2013

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Selection and Phylogenetics of Salmonid MHC Class I: Wild Brown Trout (Salmo trutta) Differ from a Non-Native Introduced Strain

Brian O'Farrell, John A. H. Benzie, Phil McGinnity, Elvira de Eyto, Eileen Dillane, James Coughlan, Tom F. Cross

published 07 May 2013

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Neutralizing Antibodies in Patients with Chronic Hepatitis C, Genotype 1, against a Panel of Genotype 1 Culture Viruses: Lack of Correlation to Treatment Outcome

Jannie Pedersen, Tanja B. Jensen, Thomas H. R. Carlsen, Kristian Schønning, Peer Brehm Christensen, Alex Lund Laursen, Henrik Krarup, Jens Bukh, Nina Weis

published 07 May 2013

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Two-Gene Phylogeny of Bright-Spored Myxomycetes (Slime Moulds, Superorder Lucisporidia)

Anna Maria Fiore-Donno, Fionn Clissmann, Marianne Meyer, Martin Schnittler, Thomas Cavalier-Smith

published 07 May 2013

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Large-Scale Modelling of the Divergent Spectrin Repeats in Nesprins: Giant Modular Proteins

Flavia Autore, Mark Pfuhl, Xueping Quan, Aisling Williams, Roland G. Roberts, Catherine M. Shanahan, Franca Fraternali

published 06 May 2013

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Tryptogalinin Is a Tick Kunitz Serine Protease Inhibitor with a Unique Intrinsic Disorder

James J. Valdés, Alexandra Schwarz, Israel Cabeza de Vaca, Eric Calvo, Joao H. F. Pedra, Victor Guallar, Michalis Kotsyfakis

published 03 May 2013

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Equivalent Indels – Ambiguous Functional Classes and Redundancy in Databases

Jens Assmus, Jürgen Kleffe, Armin O. Schmitt, Gudrun A. Brockmann

published 02 May 2013

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Generation and Analysis of the Expressed Sequence Tags from the Mycelium of Ganoderma lucidum

Yen-Hua Huang, Hung-Yi Wu, Keh-Ming Wu, Tze-Tze Liu, Ruey-Fen Liou, Shih-Feng Tsai, Ming-Shi Shiao, Low-Tone Ho, Shean-Shong Tzean, Ueng-Cheng Yang

published 02 May 2013

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CLUSTOM: A Novel Method for Clustering 16S rRNA Next Generation Sequences by Overlap Minimization

Kyuin Hwang, Jeongsu Oh, Tae-Kyung Kim, Byung Kwon Kim, Dong Su Yu, Bo Kyeng Hou, Gustavo Caetano-Anollés, Soon Gyu Hong, Kyung Mo Kim

published 01 May 2013

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CNVrd, a Read-Depth Algorithm for Assigning Copy-Number at the FCGR Locus: Population-Specific Tagging of Copy Number Variation at FCGR3B

Hoang tan Nguyen, Tony R. Merriman, Michael A. Black

published 30 Apr 2013

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Phylogenetic and Evolutionary Analysis of Chinese Leishmania Isolates Based on Multilocus Sequence Typing

Chun-Ying Zhang, Xiao-Jun Lu, Xiao-Qing Du, Jun Jian, Ling Shu, Ying Ma

published 30 Apr 2013

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Variation in Heterozygosity Predicts Variation in Human Substitution Rates between Populations, Individuals and Genomic Regions

William Amos

published 30 Apr 2013

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