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Sequence alignment

Compression of FASTQ and SAM Format Sequencing Data

James K. Bonfield, Matthew V. Mahoney

Toll-Like Receptor 7 Agonists: Chemical Feature Based Pharmacophore Identification and Molecular Docking Studies

Hui Yu, Hongwei Jin, [ ... ], Yongchun Yu

Detailed Molecular Epidemiologic Characterization of HIV-1 Infection in Bulgaria Reveals Broad Diversity and Evolving Phylodynamics

Ivailo Alexiev Ivanov, Danail Beshkov, [ ... ], William M. Switzer

The Differential Antiviral Activities of Chicken Interferon α (ChIFN-α) and ChIFN-β are Related to Distinct Interferon-Stimulated Gene Expression

Hongren Qu, Limin Yang, [ ... ], Wenjun Liu

A Small Set of Succinct Signature Patterns Distinguishes Chinese and Non-Chinese HIV-1 Genomes

Yan Wang, Reda Rawi, [ ... ], Daniel Hoffmann

Complex Regulation by Apetala2 Domain-Containing Transcription Factors Revealed through Analysis of the Stress-Responsive TdCor410b Promoter from Durum Wheat

Omid Eini, Nannan Yang, [ ... ], Sergiy Lopato

The Molecular Characterization of Bovine Leukaemia Virus Isolates from Eastern Europe and Siberia and Its Impact on Phylogeny

Marzena Rola-Łuszczak, Aneta Pluta, [ ... ], Jacek Kuźmak

Contradiction between Plastid Gene Transcription and Function Due to Complex Posttranscriptional Splicing: An Exemplary Study of ycf15 Function and Evolution in Angiosperms

Chao Shi, Yuan Liu, [ ... ], Li-Zhi Gao

DendroBLAST: Approximate Phylogenetic Trees in the Absence of Multiple Sequence Alignments

Steven Kelly, Philip K. Maini

An Artificial Functional Family Filter in Homolog Searching in Next-generation Sequencing Metagenomics

Ruofei Du, Donald Mercante, Zhide Fang

A Preliminary Molecular Phylogeny of Planthoppers (Hemiptera: Fulgoroidea) Based on Nuclear and Mitochondrial DNA Sequences

Nan Song, Ai-Ping Liang

Identification and Characterization of the miRNA Transcriptome of Ovis aries

Shifang Zhang, Fuping Zhao, [ ... ], Lixin Du

Actinidia DRM1 - An Intrinsically Disordered Protein Whose mRNA Expression Is Inversely Correlated with Spring Budbreak in Kiwifruit

Marion Wood, Georgina M. Rae, [ ... ], Vladimir N. Uversky

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