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Sequence alignment

CISA: Contig Integrator for Sequence Assembly of Bacterial Genomes

Shin-Hung Lin, Yu-Chieh Liao

Improving Indel Detection Specificity of the Ion Torrent PGM Benchtop Sequencer

Zhen Xuan Yeo, Maurice Chan, [ ... ], Ann Siew Gek Lee

DNA Barcoding of Recently Diverged Species: Relative Performance of Matching Methods

Robin van Velzen, Emanuel Weitschek, Giovanni Felici, Freek T. Bakker

Optimized Cryopreservation of Mixed Microbial Communities for Conserved Functionality and Diversity

Frederiek-Maarten Kerckhof, Emilie N. P. Courtens, [ ... ], Nico Boon

SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner

Ruibang Luo, Thomas Wong, [ ... ], Tak-Wah Lam

CRISPR MultiTargeter: A Web Tool to Find Common and Unique CRISPR Single Guide RNA Targets in a Set of Similar Sequences

Sergey V. Prykhozhij, Vinothkumar Rajan, Daniel Gaston, Jason N. Berman

Transcriptome-Wide Identification of Novel Imprinted Genes in Neonatal Mouse Brain

Xu Wang, Qi Sun, [ ... ], Andrew G. Clark

Metagenomic Analysis of a Tropical Composting Operation at the São Paulo Zoo Park Reveals Diversity of Biomass Degradation Functions and Organisms

Layla Farage Martins, Luciana Principal Antunes, [ ... ], João Carlos Setubal

RNA-Seq Gene Profiling - A Systematic Empirical Comparison

Nuno A. Fonseca, John Marioni, Alvis Brazma

A Reconsideration of the Classification of the Spider Infraorder Mygalomorphae (Arachnida: Araneae) Based on Three Nuclear Genes and Morphology

Jason E. Bond, Brent E. Hendrixson, Chris A. Hamilton, Marshal Hedin

Systematic Characterization and Comparative Analysis of the Rabbit Immunoglobulin Repertoire

Jason J. Lavinder, Kam Hon Hoi, [ ... ], George Georgiou

The Effect of Primer Choice and Short Read Sequences on the Outcome of 16S rRNA Gene Based Diversity Studies

Jonas Ghyselinck, Stefan Pfeiffer, [ ... ], Paul De Vos

Bacterial Community Development in Experimental Gingivitis

James O. Kistler, Veronica Booth, David J. Bradshaw, William G. Wade

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