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Sequence alignment

Transcriptome-Mining for Single-Copy Nuclear Markers in Ferns

Carl J. Rothfels, Anders Larsson, Fay-Wei Li, Erin M. Sigel, Layne Huiet, Dylan O. Burge, Markus Ruhsam, Sean W. Graham, Dennis W. Stevenson, Gane Ka-Shu Wong, Petra Korall, Kathleen M. Pryer

published 08 Oct 2013

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Insights into the Prostanoid Pathway in the Ovary Development of the Penaeid Shrimp Penaeus monodon

Wananit Wimuttisuk, Punsa Tobwor, Pacharawan Deenarn, Kannawat Danwisetkanjana, Decha Pinkaew, Kanyawim Kirtikara, Vanicha Vichai

published 08 Oct 2013

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Multilocus Sequence Analysis of Nectar Pseudomonads Reveals High Genetic Diversity and Contrasting Recombination Patterns

Sergio Álvarez-Pérez, Clara de Vega, Carlos M. Herrera

published 08 Oct 2013

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Coval: Improving Alignment Quality and Variant Calling Accuracy for Next-Generation Sequencing Data

Shunichi Kosugi, Satoshi Natsume, Kentaro Yoshida, Daniel MacLean, Liliana Cano, Sophien Kamoun, Ryohei Terauchi

published 08 Oct 2013

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An Efficient Strategy for Small-Scale Screening and Production of Archaeal Membrane Transport Proteins in Escherichia coli

Pikyee Ma, Filipa Varela, Malgorzata Magoch, Ana Rita Silva, Ana Lúcia Rosário, José Brito, Tânia Filipa Oliveira, Przemyslaw Nogly, Miguel Pessanha, Meike Stelter, Arnulf Kletzin, Peter J. F. Henderson, Margarida Archer

published 07 Oct 2013

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OptZyme: Computational Enzyme Redesign Using Transition State Analogues

Matthew J. Grisewood, Nathanael P. Gifford, Robert J. Pantazes, Ye Li, Patrick C. Cirino, Michael J. Janik, Costas D. Maranas

published 07 Oct 2013

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Signals of Historical Interlocus Gene Conversion in Human Segmental Duplications

Beth L. Dumont, Evan E. Eichler

published 04 Oct 2013

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Improved Detection of Rare HIV-1 Variants using 454 Pyrosequencing

Brendan B. Larsen, Lennie Chen, Brandon S. Maust, Moon Kim, Hong Zhao, Wenjie Deng, Dylan Westfall, Ingrid Beck, Lisa M. Frenkel, James I. Mullins

published 02 Oct 2013

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The Choice of PCR Primers Has Great Impact on Assessments of Bacterial Community Diversity and Dynamics in a Wastewater Treatment Plant

Nils Johan Fredriksson, Malte Hermansson, Britt-Marie Wilén

published 01 Oct 2013

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High-Throughput RNA Sequencing of Pseudomonas-Infected Arabidopsis Reveals Hidden Transcriptome Complexity and Novel Splice Variants

Brian E. Howard, Qiwen Hu, Ahmet Can Babaoglu, Manan Chandra, Monica Borghi, Xiaoping Tan, Luyan He, Heike Winter-Sederoff, Walter Gassmann, Paola Veronese, Steffen Heber

published 01 Oct 2013

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Genome-Wide Analysis of the Dof Transcription Factor Gene Family Reveals Soybean-Specific Duplicable and Functional Characteristics

Yong Guo, Li-Juan Qiu

published 30 Sep 2013

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Combined Amplicon Pyrosequencing Assays Reveal Presence of the Apicomplexan “type-N” (cf. Gemmocystis cylindrus) and Chromera velia on the Great Barrier Reef, Australia

Jan Šlapeta, Marjorie C. Linares

published 30 Sep 2013

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Variant Callers for Next-Generation Sequencing Data: A Comparison Study

Xiangtao Liu, Shizhong Han, Zuoheng Wang, Joel Gelernter, Bao-Zhu Yang

published 27 Sep 2013

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