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Sequence alignment

Transcriptome-Mining for Single-Copy Nuclear Markers in Ferns

Carl J. Rothfels, Anders Larsson, [ ... ], Kathleen M. Pryer

Insights into the Prostanoid Pathway in the Ovary Development of the Penaeid Shrimp Penaeus monodon

Wananit Wimuttisuk, Punsa Tobwor, [ ... ], Vanicha Vichai

Multilocus Sequence Analysis of Nectar Pseudomonads Reveals High Genetic Diversity and Contrasting Recombination Patterns

Sergio Álvarez-Pérez, Clara de Vega, Carlos M. Herrera

Coval: Improving Alignment Quality and Variant Calling Accuracy for Next-Generation Sequencing Data

Shunichi Kosugi, Satoshi Natsume, [ ... ], Ryohei Terauchi

An Efficient Strategy for Small-Scale Screening and Production of Archaeal Membrane Transport Proteins in Escherichia coli

Pikyee Ma, Filipa Varela, [ ... ], Margarida Archer

OptZyme: Computational Enzyme Redesign Using Transition State Analogues

Matthew J. Grisewood, Nathanael P. Gifford, [ ... ], Costas D. Maranas

Signals of Historical Interlocus Gene Conversion in Human Segmental Duplications

Beth L. Dumont, Evan E. Eichler

Improved Detection of Rare HIV-1 Variants using 454 Pyrosequencing

Brendan B. Larsen, Lennie Chen, [ ... ], James I. Mullins

The Choice of PCR Primers Has Great Impact on Assessments of Bacterial Community Diversity and Dynamics in a Wastewater Treatment Plant

Nils Johan Fredriksson, Malte Hermansson, Britt-Marie Wilén

High-Throughput RNA Sequencing of Pseudomonas-Infected Arabidopsis Reveals Hidden Transcriptome Complexity and Novel Splice Variants

Brian E. Howard, Qiwen Hu, [ ... ], Steffen Heber

Genome-Wide Analysis of the Dof Transcription Factor Gene Family Reveals Soybean-Specific Duplicable and Functional Characteristics

Yong Guo, Li-Juan Qiu

Combined Amplicon Pyrosequencing Assays Reveal Presence of the Apicomplexan “type-N” (cf. Gemmocystis cylindrus) and Chromera velia on the Great Barrier Reef, Australia

Jan Šlapeta, Marjorie C. Linares

Variant Callers for Next-Generation Sequencing Data: A Comparison Study

Xiangtao Liu, Shizhong Han, [ ... ], Bao-Zhu Yang

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