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Sequence alignment

Full-Genome Characterisation of Orungo, Lebombo and Changuinola Viruses Provides Evidence for Co-Evolution of Orbiviruses with Their Arthropod Vectors

Fauziah Mohd Jaafar, Mourad Belhouchet, Manjunatha Belaganahalli, Robert B. Tesh, Peter P. C. Mertens, Houssam Attoui

published 24 Jan 2014

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Distribution of Gifsy-3 and of Variants of ST64B and Gifsy-1 Prophages amongst Salmonella enterica Serovar Typhimurium Isolates: Evidence that Combinations of Prophages Promote Clonality

Lester Hiley, Ning-Xia Fang, Gino R. Micalizzi, John Bates

published 24 Jan 2014

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LABEL: Fast and Accurate Lineage Assignment with Assessment of H5N1 and H9N2 Influenza A Hemagglutinins

Samuel S. Shepard, C. Todd Davis, Justin Bahl, Pierre Rivailler, Ian A. York, Ruben O. Donis

published 23 Jan 2014

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Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications

Himabindu Kudapa, Sarwar Azam, Andrew G. Sharpe, Bunyamin Taran, Rong Li, Benjamin Deonovic, Connor Cameron, Andrew D. Farmer, Steven B. Cannon, Rajeev K. Varshney

published 23 Jan 2014

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Molecular and Genetic Characterization of Natural HIV-1 Tat Exon-1 Variants from North India and Their Functional Implications

Larance Ronsard, Sneh Lata, Jyotsna Singh, Vishnampettai G. Ramachandran, Shukla Das, Akhil C. Banerjea

published 23 Jan 2014

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CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding

Yongchao Liu, Bernt Popp, Bertil Schmidt

published 22 Jan 2014

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The Use of High-Throughput DNA Sequencing in the Investigation of Antigenic Variation: Application to Neisseria Species

John K. Davies, Paul F. Harrison, Ya-Hsun Lin, Stephanie Bartley, Chen Ai Khoo, Torsten Seemann, Catherine S. Ryan, Charlene M. Kahler, Stuart A. Hill

published 22 Jan 2014

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Peptide Binding Properties of the Three PDZ Domains of Bazooka (Drosophila Par-3)

Cao Guo Yu, Raffi Tonikian, Corinna Felsensteiner, Jacquelyn R. Jhingree, Darrell Desveaux, Sachdev S. Sidhu, Tony J. C. Harris

published 22 Jan 2014

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Genome-Wide Analysis of Promoters: Clustering by Alignment and Analysis of Regular Patterns

Lucia Pettinato, Elisa Calistri, Francesca Di Patti, Roberto Livi, Stefano Luccioli

published 22 Jan 2014

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IHF Is Required for the Transcriptional Regulation of the Desulfovibrio vulgaris Hildenborough orp Operons

Anouchka Fiévet, Eric Cascales, Odile Valette, Alain Dolla, Corinne Aubert

published 21 Jan 2014

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Bayesian Analysis of Congruence of Core Genes in Prochlorococcus and Synechococcus and Implications on Horizontal Gene Transfer

Nicholas J. Matzke, Patrick M. Shih, Cheryl A. Kerfeld

published 21 Jan 2014

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The Vertebrate RCAN Gene Family: Novel Insights into Evolution, Structure and Regulation

Eva Serrano-Candelas, Domènec Farré, Álvaro Aranguren-Ibáñez, Sergio Martínez-Høyer, Mercè Pérez-Riba

published 20 Jan 2014

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Large Scale Identification and Categorization of Protein Sequences Using Structured Logistic Regression

Bjørn P. Pedersen, Georgiana Ifrim, Poul Liboriussen, Kristian B. Axelsen, Michael G. Palmgren, Poul Nissen, Carsten Wiuf, Christian N. S. Pedersen

published 20 Jan 2014

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