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Sequence alignment

Full-Genome Characterisation of Orungo, Lebombo and Changuinola Viruses Provides Evidence for Co-Evolution of Orbiviruses with Their Arthropod Vectors

Fauziah Mohd Jaafar, Mourad Belhouchet, [ ... ], Houssam Attoui

Distribution of Gifsy-3 and of Variants of ST64B and Gifsy-1 Prophages amongst Salmonella enterica Serovar Typhimurium Isolates: Evidence that Combinations of Prophages Promote Clonality

Lester Hiley, Ning-Xia Fang, Gino R. Micalizzi, John Bates

LABEL: Fast and Accurate Lineage Assignment with Assessment of H5N1 and H9N2 Influenza A Hemagglutinins

Samuel S. Shepard, C. Todd Davis, [ ... ], Ruben O. Donis

Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications

Himabindu Kudapa, Sarwar Azam, [ ... ], Rajeev K. Varshney

Molecular and Genetic Characterization of Natural HIV-1 Tat Exon-1 Variants from North India and Their Functional Implications

Larance Ronsard, Sneh Lata, [ ... ], Akhil C. Banerjea

CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding

Yongchao Liu, Bernt Popp, Bertil Schmidt

The Use of High-Throughput DNA Sequencing in the Investigation of Antigenic Variation: Application to Neisseria Species

John K. Davies, Paul F. Harrison, [ ... ], Stuart A. Hill

Peptide Binding Properties of the Three PDZ Domains of Bazooka (Drosophila Par-3)

Cao Guo Yu, Raffi Tonikian, [ ... ], Tony J. C. Harris

Genome-Wide Analysis of Promoters: Clustering by Alignment and Analysis of Regular Patterns

Lucia Pettinato, Elisa Calistri, [ ... ], Stefano Luccioli

IHF Is Required for the Transcriptional Regulation of the Desulfovibrio vulgaris Hildenborough orp Operons

Anouchka Fiévet, Eric Cascales, [ ... ], Corinne Aubert

Bayesian Analysis of Congruence of Core Genes in Prochlorococcus and Synechococcus and Implications on Horizontal Gene Transfer

Nicholas J. Matzke, Patrick M. Shih, Cheryl A. Kerfeld

The Vertebrate RCAN Gene Family: Novel Insights into Evolution, Structure and Regulation

Eva Serrano-Candelas, Domènec Farré, [ ... ], Mercè Pérez-Riba

Large Scale Identification and Categorization of Protein Sequences Using Structured Logistic Regression

Bjørn P. Pedersen, Georgiana Ifrim, [ ... ], Christian N. S. Pedersen

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