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Sequence alignment

Combining Transcriptome Assemblies from Multiple De Novo Assemblers in the Allo-Tetraploid Plant Nicotiana benthamiana

Kenlee Nakasugi, Ross Crowhurst, Julia Bally, Peter Waterhouse

published 10 Mar 2014

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Redefining the Human Oral Mycobiome with Improved Practices in Amplicon-based Taxonomy: Discovery of Malassezia as a Prominent Commensal

Amanda K. Dupuy, Marika S. David, Lu Li, Thomas N. Heider, Jason D. Peterson, Elizabeth A. Montano, Anna Dongari-Bagtzoglou, Patricia I. Diaz, Linda D. Strausbaugh

published 10 Mar 2014

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Sequencing of Chloroplast Genomes from Wheat, Barley, Rye and Their Relatives Provides a Detailed Insight into the Evolution of the Triticeae Tribe

Christopher P. Middleton, Natacha Senerchia, Nils Stein, Eduard D. Akhunov, Beat Keller, Thomas Wicker, Benjamin Kilian

published 10 Mar 2014

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HIV-1 Subtypes B and C Unique Recombinant Forms (URFs) and Transmitted Drug Resistance Identified in the Western Cape Province, South Africa

Graeme Brendon Jacobs, Eduan Wilkinson, Shahieda Isaacs, Georgina Spies, Tulio de Oliveira, Soraya Seedat, Susan Engelbrecht

published 07 Mar 2014

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Where Taxonomy Based on Subtle Morphological Differences Is Perfectly Mirrored by Huge Genetic Distances: DNA Barcoding in Protura (Hexapoda)

Monika Carol Resch, Julia Shrubovych, Daniela Bartel, Nikolaus U. Szucsich, Gerald Timelthaler, Yun Bu, Manfred Walzl, Günther Pass

published 07 Mar 2014

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PolyaPeak: Detecting Transcription Factor Binding Sites from ChIP-seq Using Peak Shape Information

Hao Wu, Hongkai Ji

published 07 Mar 2014

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Palindromic Sequence Artifacts Generated during Next Generation Sequencing Library Preparation from Historic and Ancient DNA

Bastiaan Star, Alexander J. Nederbragt, Marianne H. S. Hansen, Morten Skage, Gregor D. Gilfillan, Ian R. Bradbury, Christophe Pampoulie, Nils Chr Stenseth, Kjetill S. Jakobsen, Sissel Jentoft

published 07 Mar 2014

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The Bitter Barricading of Prostaglandin Biosynthesis Pathway: Understanding the Molecular Mechanism of Selective Cyclooxygenase-2 Inhibition by Amarogentin, a Secoiridoid Glycoside from Swertia chirayita

Shantanu Shukla, Khushboo Bafna, Durai Sundar, Sunil S. Thorat

published 06 Mar 2014

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MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping

Wan-Ping Lee, Michael P. Stromberg, Alistair Ward, Chip Stewart, Erik P. Garrison, Gabor T. Marth

published 05 Mar 2014

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Optimal Eukaryotic 18S and Universal 16S/18S Ribosomal RNA Primers and Their Application in a Study of Symbiosis

Yong Wang, Ren Mao Tian, Zhao Ming Gao, Salim Bougouffa, Pei-Yuan Qian

published 03 Mar 2014

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Episodic Positive Selection in the Evolution of Avian Toll-Like Receptor Innate Immunity Genes

Catherine E. Grueber, Graham P. Wallis, Ian G. Jamieson

published 03 Mar 2014

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TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

Jeffrey C. Glaubitz, Terry M. Casstevens, Fei Lu, James Harriman, Robert J. Elshire, Qi Sun, Edward S. Buckler

published 28 Feb 2014

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Monitoring Fibrous Scaffold Guidance of Three-Dimensional Collagen Organisation Using Minimally-Invasive Second Harmonic Generation

Robin M. Delaine-Smith, Nicola H. Green, Stephen J. Matcher, Sheila MacNeil, Gwendolen C. Reilly

published 28 Feb 2014

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