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Sequence alignment

Combining Transcriptome Assemblies from Multiple De Novo Assemblers in the Allo-Tetraploid Plant Nicotiana benthamiana

Kenlee Nakasugi, Ross Crowhurst, Julia Bally, Peter Waterhouse

Redefining the Human Oral Mycobiome with Improved Practices in Amplicon-based Taxonomy: Discovery of Malassezia as a Prominent Commensal

Amanda K. Dupuy, Marika S. David, [ ... ], Linda D. Strausbaugh

Sequencing of Chloroplast Genomes from Wheat, Barley, Rye and Their Relatives Provides a Detailed Insight into the Evolution of the Triticeae Tribe

Christopher P. Middleton, Natacha Senerchia, [ ... ], Benjamin Kilian

HIV-1 Subtypes B and C Unique Recombinant Forms (URFs) and Transmitted Drug Resistance Identified in the Western Cape Province, South Africa

Graeme Brendon Jacobs, Eduan Wilkinson, [ ... ], Susan Engelbrecht

Where Taxonomy Based on Subtle Morphological Differences Is Perfectly Mirrored by Huge Genetic Distances: DNA Barcoding in Protura (Hexapoda)

Monika Carol Resch, Julia Shrubovych, [ ... ], Günther Pass

PolyaPeak: Detecting Transcription Factor Binding Sites from ChIP-seq Using Peak Shape Information

Hao Wu, Hongkai Ji

Palindromic Sequence Artifacts Generated during Next Generation Sequencing Library Preparation from Historic and Ancient DNA

Bastiaan Star, Alexander J. Nederbragt, [ ... ], Sissel Jentoft

The Bitter Barricading of Prostaglandin Biosynthesis Pathway: Understanding the Molecular Mechanism of Selective Cyclooxygenase-2 Inhibition by Amarogentin, a Secoiridoid Glycoside from Swertia chirayita

Shantanu Shukla, Khushboo Bafna, Durai Sundar, Sunil S. Thorat

MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping

Wan-Ping Lee, Michael P. Stromberg, [ ... ], Gabor T. Marth

Optimal Eukaryotic 18S and Universal 16S/18S Ribosomal RNA Primers and Their Application in a Study of Symbiosis

Yong Wang, Ren Mao Tian, [ ... ], Pei-Yuan Qian

Episodic Positive Selection in the Evolution of Avian Toll-Like Receptor Innate Immunity Genes

Catherine E. Grueber, Graham P. Wallis, Ian G. Jamieson

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

Jeffrey C. Glaubitz, Terry M. Casstevens, [ ... ], Edward S. Buckler

Monitoring Fibrous Scaffold Guidance of Three-Dimensional Collagen Organisation Using Minimally-Invasive Second Harmonic Generation

Robin M. Delaine-Smith, Nicola H. Green, [ ... ], Gwendolen C. Reilly

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