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Sequence alignment

Ubiquity and Diversity of Human-Associated Demodex Mites

Megan S. Thoemmes, Daniel J. Fergus, Julie Urban, Michelle Trautwein, Robert R. Dunn

published 27 Aug 2014

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HrrF Is the Fur-Regulated Small RNA in Nontypeable Haemophilus influenzae

Estevan A. Santana, Alistair Harrison, Xinjun Zhang, Beth D. Baker, Benjamin J. Kelly, Peter White, Yunlong Liu, Robert S. Munson Jr

published 26 Aug 2014

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OptMAVEn – A New Framework for the de novo Design of Antibody Variable Region Models Targeting Specific Antigen Epitopes

Tong Li, Robert J. Pantazes, Costas D. Maranas

published 25 Aug 2014

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Comparative Analysis of Functional Metagenomic Annotation and the Mappability of Short Reads

Rogan Carr, Elhanan Borenstein

published 22 Aug 2014

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Choice of Reference Sequence and Assembler for Alignment of Listeria monocytogenes Short-Read Sequence Data Greatly Influences Rates of Error in SNP Analyses

Arthur W. Pightling, Nicholas Petronella, Franco Pagotto

published 21 Aug 2014

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Insertions or Deletions (Indels) in the rrn 16S-23S rRNA Gene Internal Transcribed Spacer Region (ITS) Compromise the Typing and Identification of Strains within the Acinetobacter calcoaceticus-baumannii (Acb) Complex and Closely Related Members

Christopher Maslunka, Bianca Gifford, Joseph Tucci, Volker Gürtler, Robert J. Seviour

published 20 Aug 2014

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Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data

Peter Skewes-Cox, Thomas J. Sharpton, Katherine S. Pollard, Joseph L. DeRisi

published 20 Aug 2014

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Oligomerization Mechanisms of an H-NS Family Protein, Pmr, Encoded on the Plasmid pCAR1 Provide a Molecular Basis for Functions of H-NS Family Members

Chiho Suzuki, Kohei Kawazuma, Shoichiro Horita, Tohru Terada, Masaru Tanokura, Kazunori Okada, Hisakazu Yamane, Hideaki Nojiri

published 19 Aug 2014

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A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods

Charles F. A. de Bourcy, Iwijn De Vlaminck, Jad N. Kanbar, Jianbin Wang, Charles Gawad, Stephen R. Quake

published 19 Aug 2014

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Transcriptome Analysis of the Oil-Rich Tea Plant, Camellia oleifera, Reveals Candidate Genes Related to Lipid Metabolism

En-Hua Xia, Jian-Jun Jiang, Hui Huang, Li-Ping Zhang, Hai-Bin Zhang, Li-Zhi Gao

published 19 Aug 2014

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Genome-Wide Prediction of the Polymorphic Ser Gene Family in Tetrahymena thermophila Based on Motif Analysis

Patrath Ponsuwanna, Krittikorn Kümpornsin, Thanat Chookajorn

published 18 Aug 2014

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A Rank-Based Sequence Aligner with Applications in Phylogenetic Analysis

Liviu P. Dinu, Radu Tudor Ionescu, Alexandru I. Tomescu

published 18 Aug 2014

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Assessment of Species Diversity and Distribution of an Ancient Diatom Lineage Using a DNA Metabarcoding Approach

Deepak Nanjappa, Stephane Audic, Sarah Romac, Wiebe H. C. F. Kooistra, Adriana Zingone

published 18 Aug 2014

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