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Sequence alignment

Ubiquity and Diversity of Human-Associated Demodex Mites

Megan S. Thoemmes, Daniel J. Fergus, [ ... ], Robert R. Dunn

HrrF Is the Fur-Regulated Small RNA in Nontypeable Haemophilus influenzae

Estevan A. Santana, Alistair Harrison, [ ... ], Robert S. Munson Jr

OptMAVEn – A New Framework for the de novo Design of Antibody Variable Region Models Targeting Specific Antigen Epitopes

Tong Li, Robert J. Pantazes, Costas D. Maranas

Comparative Analysis of Functional Metagenomic Annotation and the Mappability of Short Reads

Rogan Carr, Elhanan Borenstein

Choice of Reference Sequence and Assembler for Alignment of Listeria monocytogenes Short-Read Sequence Data Greatly Influences Rates of Error in SNP Analyses

Arthur W. Pightling, Nicholas Petronella, Franco Pagotto

Insertions or Deletions (Indels) in the rrn 16S-23S rRNA Gene Internal Transcribed Spacer Region (ITS) Compromise the Typing and Identification of Strains within the Acinetobacter calcoaceticus-baumannii (Acb) Complex and Closely Related Members

Christopher Maslunka, Bianca Gifford, [ ... ], Robert J. Seviour

Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data

Peter Skewes-Cox, Thomas J. Sharpton, Katherine S. Pollard, Joseph L. DeRisi

Oligomerization Mechanisms of an H-NS Family Protein, Pmr, Encoded on the Plasmid pCAR1 Provide a Molecular Basis for Functions of H-NS Family Members

Chiho Suzuki, Kohei Kawazuma, [ ... ], Hideaki Nojiri

A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods

Charles F. A. de Bourcy, Iwijn De Vlaminck, [ ... ], Stephen R. Quake

Transcriptome Analysis of the Oil-Rich Tea Plant, Camellia oleifera, Reveals Candidate Genes Related to Lipid Metabolism

En-Hua Xia, Jian-Jun Jiang, [ ... ], Li-Zhi Gao

Genome-Wide Prediction of the Polymorphic Ser Gene Family in Tetrahymena thermophila Based on Motif Analysis

Patrath Ponsuwanna, Krittikorn Kümpornsin, Thanat Chookajorn

A Rank-Based Sequence Aligner with Applications in Phylogenetic Analysis

Liviu P. Dinu, Radu Tudor Ionescu, Alexandru I. Tomescu

Assessment of Species Diversity and Distribution of an Ancient Diatom Lineage Using a DNA Metabarcoding Approach

Deepak Nanjappa, Stephane Audic, [ ... ], Adriana Zingone

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