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Sequence alignment

Chromosomal gene order defines several structural classes of Staphylococcus epidermidis genomes

Naya Nagy, Paul Hodor

published 04 Oct 2024

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A new amino acid substitution in the MvALS1 gene of metsulfuron-methyl resistant biotypes Monochoria vaginalis (Burm. f.) C. Presl from West Java, Indonesia

Kansa Dianti Putri, Dwi Guntoro, Sintho Wahyuning Ardie, Hariyadi

published 04 Oct 2024

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Avidity sequencing of whole genomes from retinal degeneration pedigrees identifies causal variants

Pooja Biswas, Adda Villanueva, Benjamin J. Krajacich, Juan Moreno, Junhua Zhao, Anne Marie Berry, Danielle Lazaro, Bryan R. Lajoie, Semyon Kruglyak, Radha Ayyagari

published 04 Oct 2024

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GenerRNA: A generative pre-trained language model for de novo RNA design

Yichong Zhao, Kenta Oono, Hiroki Takizawa, Masaaki Kotera

published 01 Oct 2024

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Comparing the effectiveness of environmental DNA and camera traps for surveying American mink (Neogale vison) in northeastern Indiana

Eleanor L. Di Girolamo, Mark A. Jordan, Geriann Albers, Scott M. Bergeson

published 23 Sep 2024

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Graph-based analysis of DNA sequence comparison in closed cotton species: A generalized method to unveil genetic connections

Riaz Hussain Khan, Nadeem Salamat, A. Q. Baig, Zaffar Ahmed Shaikh, Amr Yousef

published 17 Sep 2024

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Gene sequence analysis model construction based on k-mer statistics

Dongjie Gao

published 12 Sep 2024

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Heterogeneity in establishment of polyethylene glycol-mediated plasmid transformations for five forest pathogenic Phytophthora species

Erika N. Dort, Richard C. Hamelin

published 10 Sep 2024

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Combination therapy synergism prediction for virus treatment using machine learning models

Shayan Majidifar, Arash Zabihian, Mohsen Hooshmand

published 04 Sep 2024

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The global population stru cture of Lacticaseibacillus rhamnosus and its application to an investigation of a rare case of infective endocarditis

Phillip P. Santoiemma, Susan E. Cohn, Samuel W. M. Gatesy, Alan R. Hauser, Saaket Agrawal, Maria E. Theodorou, Kelly E. R. Bachta, Egon A. Ozer

published 30 Aug 2024

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Conserved amino acid residues and gene expression patterns associated with the substrate preferences of the competing enzymes FLS and DFR

Nancy Choudhary, Boas Pucker

published 28 Aug 2024

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Metagenomics analysis of sewage for surveillance of antimicrobial resistance in South Africa

Anthony M. Smith, Masindi Ramudzulu, Patrick Munk, Baptiste J. P. Avot, Kerneels C. M. Esterhuyse, Nico van Blerk, Stanford Kwenda, Phuti Sekwadi

published 26 Aug 2024

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Accelerating automatic model finding with layer replications case study of MobileNetV2

Kritpawit Soongswang, Chantana Chantrapornchai

published 22 Aug 2024

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