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Sequence alignment

Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC++

Jorge González-Domínguez, Yongchao Liu, Bertil Schmidt

published 05 Jan 2016

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Characterization and Expression of the Zebrafish qki Paralogs

Katarzyna J. Radomska, Jonathan Sager, Bryn Farnsworth, Åsa Tellgren-Roth, Giulia Tuveri, Christiane Peuckert, Petronella Kettunen, Elena Jazin, Lina S. Emilsson

published 04 Jan 2016

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SW#db: GPU-Accelerated Exact Sequence Similarity Database Search

Matija Korpar, Martin Šošić, Dino Blažeka, Mile Šikić

published 31 Dec 2015

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Application of a Novel “Pan-Genome”-Based Strategy for Assigning RNAseq Transcript Reads to Staphylococcus aureus Strains

Diego Chaves-Moreno, Melissa L. Wos-Oxley, Ruy Jáuregui, Eva Medina, Andrew P. A. Oxley, Dietmar H. Pieper

published 30 Dec 2015

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Structural Motifs Critical for In Vivo Function and Stability of the RecQ-Mediated Genome Instability Protein Rmi1

Jessica A. Kennedy, Salahuddin Syed, Kristina H. Schmidt

published 30 Dec 2015

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Tissue Restricted Splice Junctions Originate Not Only from Tissue-Specific Gene Loci, but Gene Loci with a Broad Pattern of Expression

Matthew S. Hestand, Zheng Zeng, Stephen J. Coleman, Jinze Liu, James N. MacLeod

published 29 Dec 2015

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The Insulin-Like Growth Factor System in the Long-Lived Naked Mole-Rat

Malene Brohus, Vera Gorbunova, Chris G. Faulkes, Michael T. Overgaard, Cheryl A. Conover

published 22 Dec 2015

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Investigation of a Quadruplex-Forming Repeat Sequence Highly Enriched in Xanthomonas and Nostoc sp.

Charlotte Rehm, Lena A. Wurmthaler, Yuanhao Li, Tancred Frickey, Jörg S. Hartig

published 22 Dec 2015

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A Nonsynonymous/Synonymous Substitution Analysis of the B56 Gene Family Aids in Understanding B56 Isoform Diversity

Osama Qureshi, Hyuk Cho, Madhusudan Choudhary, Joni M. Seeling

published 21 Dec 2015

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Xerotolerant Cladosporium sphaerospermum Are Predominant on Indoor Surfaces Compared to Other Cladosporium Species

Frank J. J. Segers, Martin Meijer, Jos Houbraken, Robert A. Samson, Han A. B. Wösten, Jan Dijksterhuis

published 21 Dec 2015

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Rhynchophorus palmarum in Disguise: Undescribed Polymorphism in the “Black” Palm Weevil

Bernhard Löhr, Aymer Andrés Vásquez-Ordóñez, Luis Augusto Becerra Lopez-Lavalle

published 18 Dec 2015

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Covariation between Spike and LFP Modulations Revealed with Focal and Asynchronous Stimulation of Receptive Field Surround in Monkey Primary Visual Cortex

Kayeon Kim, Taekjun Kim, Taehwan Yoon, Choongkil Lee

published 15 Dec 2015

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The Rickettsia Endosymbiont of Ixodes pacificus Contains All the Genes of De Novo Folate Biosynthesis

Daniel J. Hunter, Jessica L. Torkelson, James Bodnar, Bobak Mortazavi, Timothy Laurent, Jeff Deason, Khanhkeo Thephavongsa, Jianmin Zhong

published 09 Dec 2015

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