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Sequence alignment

Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing

James A. Stapleton, Jeongwoon Kim, John P. Hamilton, Ming Wu, Luiz C. Irber, Rohan Maddamsetti, Bryan Briney, Linsey Newton, Dennis R. Burton, C. Titus Brown, Christina Chan, C. Robin Buell, Timothy A. Whitehead

published 20 Jan 2016

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On the Evolutionary History of Uleiella chilensis, a Smut Fungus Parasite of Araucaria araucana in South America: Uleiellales ord. nov. in Ustilaginomycetes

Kai Riess, Max E. Schön, Matthias Lutz, Heinz Butin, Franz Oberwinkler, Sigisfredo Garnica

published 20 Jan 2016

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CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking

Lei Hua, Yang Song, Namhee Kim, Christian Laing, Jason T. L. Wang, Tamar Schlick

published 20 Jan 2016

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A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing

Elizabeth P. St. John, Birgitte B. Simen, Gregory S. Turenchalk, Michael S. Braverman, Isabella Abbate, Jeroen Aerssens, Olivier Bouchez, Christian Gabriel, Jacques Izopet, Karolin Meixenberger, Francesca Di Giallonardo, Ralph Schlapbach, Roger Paredes, James Sakwa, Gudrun G. Schmitz-Agheguian, Alexander Thielen, Martin Victor, Karin J. Metzner, Martin P. Däumer, 454 HIV-1 Alpha Study Group

published 12 Jan 2016

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Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline

Mark Davids, Floor Hugenholtz, Vitor Martins dos Santos, Hauke Smidt, Michiel Kleerebezem, Peter J. Schaap

published 12 Jan 2016

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Identification and Functional Analysis of the Mycophenolic Acid Gene Cluster of Penicillium roqueforti

Abdiel Del-Cid, Carlos Gil-Durán, Inmaculada Vaca, Juan F. Rojas-Aedo, Ramón O. García-Rico, Gloria Levicán, Renato Chávez

published 11 Jan 2016

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DNA Barcode Analysis of Thrips (Thysanoptera) Diversity in Pakistan Reveals Cryptic Species Complexes

Romana Iftikhar, Muhammad Ashfaq, Akhtar Rasool, Paul D. N. Hebert

published 07 Jan 2016

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Comparing Residue Clusters from Thermophilic and Mesophilic Enzymes Reveals Adaptive Mechanisms

Deanne W. Sammond, Noah Kastelowitz, Michael E. Himmel, Hang Yin, Michael F. Crowley, Yannick J. Bomble

published 07 Jan 2016

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Estimation of a Killer Whale (Orcinus orca) Population’s Diet Using Sequencing Analysis of DNA from Feces

Michael J. Ford, Jennifer Hempelmann, M. Bradley Hanson, Katherine L. Ayres, Robin W. Baird, Candice K. Emmons, Jessica I. Lundin, Gregory S. Schorr, Samuel K. Wasser, Linda K. Park

published 06 Jan 2016

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SeqFeatR for the Discovery of Feature-Sequence Associations

Bettina Budeus, Jörg Timm, Daniel Hoffmann

published 05 Jan 2016

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Decoding Biomass-Sensing Regulons of Clostridium thermocellum Alternative Sigma-I Factors in a Heterologous Bacillus subtilis Host System

Iván Muñoz-Gutiérrez, Lizett Ortiz de Ora, Inna Rozman Grinberg, Yuval Garty, Edward A. Bayer, Yuval Shoham, Raphael Lamed, Ilya Borovok

published 05 Jan 2016

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Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome

Loren A. Honaas, Eric K. Wafula, Norman J. Wickett, Joshua P. Der, Yeting Zhang, Patrick P. Edger, Naomi S. Altman, J. Chris Pires, James H. Leebens-Mack, Claude W. dePamphilis

published 05 Jan 2016

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“Candidatus Fokinia solitaria”, a Novel “Stand-Alone” Symbiotic Lineage of Midichloriaceae (Rickettsiales)

Franziska Szokoli, Elena Sabaneyeva, Michele Castelli, Sascha Krenek, Martina Schrallhammer, Carlos A. G. Soares, Inacio D. da Silva-Neto, Thomas U. Berendonk, Giulio Petroni

published 05 Jan 2016

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