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RNA sequencing

Longitudinal host transcriptional responses to SARS-CoV-2 infection in adults with extremely high viral load

Vasanthi Avadhanula, Chad J. Creighton, Laura Ferlic-Stark, Divya Nagaraj, Yiqun Zhang, Richard Sucgang, Erin G. Nicholson, Anubama Rajan, Vipin Kumar Menon, Harshavardhan Doddapaneni, Donna Marie Muzny, Ginger A. Metcalf, Sara Joan Javornik Cregeen, Kristi Louise Hoffman, Richard A. Gibbs, Joseph F. Petrosino, Pedro A. Piedra

published 16 Jan 2025

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Deciphering mixed infections by plant RNA virus and reconstructing complete genomes simultaneously present within-host

Martine Bangratz, Aurore Comte, Estelle Billard, Abdoul Kader Guigma, Guillaume Gandolfi, Abalo Itolou Kassankogno, Drissa Sérémé, Nils Poulicard, Charlotte Tollenaere

published 14 Jan 2025

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Next-generation sequencing protocol of hematopoietic stem cells (HSCs). Step-by-step overview and troubleshooting guide

Justyna Jarczak, Kamila Bujko, Katarzyna Brzeźniakiewicz-Janus, Mariusz Ratajczak, Magdalena Kucia

published 09 Jan 2025

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tomoseqr: A Bioconductor package for spatial reconstruction and visualization of 3D gene expression patterns based on RNA tomography

Ryosuke Matsuzawa, Daichi Kawahara, Makoto Kashima, Hiromi Hirata, Haruka Ozaki

published 08 Jan 2025

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Clonal phylogenies inferred from bulk, single cell, and spatial transcriptomic analysis of epithelial cancers

Andrew Erickson, Sandy Figiel, Timothy Rajakumar, Srinivasa Rao, Wencheng Yin, Dimitrios Doultsinos, Anette Magnussen, Reema Singh, Ninu Poulose, Richard J. Bryant, Olivier Cussenot, Freddie C. Hamdy, Dan Woodcock, Ian G. Mills, Alastair D. Lamb

published 03 Jan 2025

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Loss of Mfn1 but not Mfn2 enhances adipogenesis

Jake P. Mann, Luis Carlos Tábara, Satish Patel, Pushpa Pushpa, Anna Alvarez-Guaita, Liang Dong, Afreen Haider, Koini Lim, Panna Tandon, Fabio Scurria, James E. N. Minchin, Stephen O’Rahilly S., Daniel J. Fazakerley, Julien Prudent, Robert K. Semple, David B. Savage

published 31 Dec 2024

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Optimizing RNA extraction methods for high-throughput transcriptome sequencing of formalin-fixed paraffin-embedded cardiac tissue specimens

Nkechi Martina Odogwu, Jin Sung Jang, Sabrina Albertson, Clinton Hagen, Boyd Rasmussen, Oommen Saji, Timothy J. Nelson, the Wanek Program Preclinical Pipeline

published 26 Dec 2024

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Molecular monitoring of short- and long-term transcriptional effects of hair growth stimulating agents

Sabrina K. Henne, Lara M. Hochfeld, Werner Bartmann, Thomas Welss, Markus M. Nöthen, Stefanie Heilmann-Heimbach

published 23 Dec 2024

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Transcriptomic analysis of male diamondback moth antennae: Response to female semiochemicals and allyl isothiocyanate

Yueqin Zheng, Qianxia Liu, Houjun Tian, Hui Wei

published 19 Dec 2024

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Comprehensive analysis of bioinformatics and system biology reveals the association between Girdin and hepatocellular carcinoma

Tengda Huang, Hongying Chen, Hongyuan Pan, Tian Wu, Xiangyi Ren, Liwen Qin, Kefei Yuan, Fang He

published 13 Dec 2024

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Comparative analysis of WC1.1⁺ and WC1.2⁺ γδ T cell subset responses from cattle naturally infected with Mycobacterium bovis to repeat stimulation with mycobacterial antigens

Alia Parveen, Sajad A. Bhat, Mahmoud Elnaggar, Kieran G. Meade

published 12 Dec 2024

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High-throughput Kinetics using capillary Electrophoresis and Robotics (HiKER) platform used to study T7, T3, and Sp6 RNA polymerase misincorporation

Zachariah I. Carter, William B. O’Brien, Sean Lund, Andrew F. Gardner

published 02 Dec 2024

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Functional regression clustering with multiple functional gene expressions

Susana Conde, Shahin Tavakoli, Daphne Ezer

published 25 Nov 2024

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