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RNA sequencing

Towards identification of postharvest fruit quality transcriptomic markers in Malus domestica

John A. Hadish, Heidi L. Hargarten, Huiting Zhang, James P. Mattheis, Loren A. Honaas, Stephen P. Ficklin

published 06 Mar 2024

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Sexual dimorphic miRNA-mediated response of bovine elongated embryos to the maternal microenvironment

Dessie Salilew-Wondim, Michael Hoelker, Eva Held-Hoelker, Franca Rings, Ernst Tholen, Christine Große-Brinkhaus, Karl Shellander, Carina Blaschka, Urban Besenfelder, Vita Havlicek, Dawit Tesfaye

published 29 Feb 2024

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Identification of SARS-CoV-2 variants in indoor dust

John Van Dusen, Haley LeBlanc, Nicholas Nastasi, Jenny Panescu, Austin Shamblin, Jacob W. Smith, Michael G. Sovic, Amanda Williams, Mikkel B. M. Quam, Seth Faith, Karen C. Dannemiller

published 09 Feb 2024

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Getting everyone to agree on gene signatures for murine macrophage polarization in vitro

Giorgia Colombo, Emanuela Pessolano, Maria Talmon, Armando A. Genazzani, Paolo Kunderfranco

published 08 Feb 2024

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Epigenetic repression of antiviral genes by SARS-CoV-2 NSP1

Dimitrios G. Anastasakis, Daniel Benhalevy, Nicolas Çuburu, Nihal Altan-Bonnet, Markus Hafner

published 26 Jan 2024

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Towards high-throughput parallel imaging and single-cell transcriptomics of microbial eukaryotic plankton

Vesna Grujčić, Sami Saarenpää, John Sundh, Bengt Sennblad, Benjamin Norgren, Meike Latz, Stefania Giacomello, Rachel A. Foster, Anders F. Andersson

published 19 Jan 2024

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The intricate cellular ecosystem of human peripheral veins as revealed by single-cell transcriptomic analysis

Miguel G. Rojas, Zachary M. Zigmond, Simone Pereira-Simon, Nieves Santos Falcon, Maya Suresh Kumar, Filipe F. Stoyell-Conti, Christina Kosanovic, Anthony J. Griswold, Alghidak Salama, Xiaofeng Yang, Marwan Tabbara, Roberto I. Vazquez-Padron, Laisel Martinez

published 11 Jan 2024

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A universal protocol for high-quality DNA and RNA isolation from diverse plant species

Farhad Masoomi-Aladizgeh, Leila Jabbari, Reza Khayam Nekouei, Ali Aalami, Brian J. Atwell, Paul A. Haynes

published 14 Dec 2023

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Ryegrass mottle virus complete genome determination and development of infectious cDNA by combining two methods– 3′ RACE and RNA-Seq

Ina Balke, Ivars Silamikelis, Ilze Radovica-Spalvina, Vilija Zeltina, Gunta Resevica, Davids Fridmanis, Andris Zeltins

published 05 Dec 2023

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Exploring cadmium stress responses in sisal roots: Insights from biochemical and transcriptome analysis

Jing Li, Lifang Ge, Ping Liu, Zhaoxue Huang, Shibei Tan, Weihuai Wu, Tao Chen, Jingen Xi, Xing Huang, Kexian Yi, Helong Chen

published 29 Nov 2023

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selSeq: A method for the enrichment of non-polyadenylated RNAs including enhancer and long non-coding RNAs for sequencing

Jason D. Limberis, Alina Nalyvayko, Joel D. Ernst, John Z. Metcalfe

published 28 Nov 2023

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Whole blood RNA extraction efficiency contributes to variability in RNA sequencing data sets

William W. Wilfinger, Hamid R. Eghbalnia, Karol Mackey, Robert Miller, Piotr Chomczynski

published 16 Nov 2023

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A novel f-divergence based generative adversarial imputation method for scRNA-seq data analysis

Tong Si, Zackary Hopkins, John Yanev, Jie Hou, Haijun Gong

published 10 Nov 2023

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