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RNA sequencing

Life in the fastlane? A comparative analysis of gene expression profiles across annual, semi-annual, and non-annual killifishes (Cyprinodontiformes: Nothobranchiidae)

Chi Jing Leow, Kyle R. Piller

published 10 Sep 2024

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Comparison and development of cross-study normalization methods for inter-species transcriptional analysis

Sofya Feldman, Hadas Ner-Gaon, Eran Treister, Tal Shay

published 10 Sep 2024

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An analysis of differential gene expression in peripheral nerve and muscle utilizing RNA sequencing after polyethylene glycol nerve fusion in a rat sciatic nerve injury model

Samantha N. Weiss, Joseph M. Legato, Yichuan Liu, Courtney N. Vaccaro, Renata Pellegrino Da Silva, Sandra Miskiel, Grace V. Gilbert, Hakon Hakonarson, David A. Fuller, Russell J. Buono

published 04 Sep 2024

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Single-cell RNA sequencing of nc886, a non-coding RNA transcribed by RNA polymerase III, with a primer spike-in strategy

Gyeong-Jin Shin, Byung-Han Choi, Hye Hyeon Eum, Areum Jo, Nayoung Kim, Huiram Kang, Dongwan Hong, Jiyoung Joan Jang, Hwi-Ho Lee, Yeon-Su Lee, Yong Sun Lee, Hae-Ock Lee

published 27 Aug 2024

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Robust isolation protocol for mouse leukocytes from blood and liver resident cells for immunology research

Dorien De Pooter, Ben De Clerck, Koen Dockx, Domenica De Santis, Sarah Sauviller, Pascale Dehertogh, Matthias Beyens, Isabelle Bergiers, Isabel Nájera, Ellen Van Gulck, Nádia Conceição-Neto, Wim Pierson

published 22 Aug 2024

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An investigation of plasma cell-free RNA for the detection of colorectal cancer: From transcriptome marker selection to targeted validation

Emmalee J. Northrop-Albrecht, Chung Wah Wu, Calise K. Berger, William R. Taylor, Patrick H. Foote, Karen A. Doering, Anna M. Gonser, Aditya Bhagwate, Zhifu Sun, Douglas W. Mahoney, Kelli N. Burger, Lisa A. Boardman, John B. Kisiel

published 15 Aug 2024

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Hepatic transcript profiling in beef cattle: Effects of feeding endophyte-infected tall fescue seeds

Gastón F. Alfaro, Valentino Palombo, MariaSilvia D’Andrea, Wenqi Cao, Yue Zhang, Jonathan E. Beever, Russell B. Muntifering, Wilmer J. Pacheco, Soren P. Rodning, Xu Wang, Sonia J. Moisá

published 26 Jul 2024

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Prostaglandin D₂ receptor 2 downstream signaling and modulation of type 2 innate lymphoid cells from patients with asthma

Christina Gress, Maximilian Fuchs, Saskia Carstensen-Aurèche, Meike Müller, Jens M. Hohlfeld

published 25 Jul 2024

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Unraveling the molecular landscape of breast muscle development in domestic Yuzhong pigeons and European meat pigeon: Insights from Iso-seq and RNA-seq analysis

Pengkun Yang, Xinghui Song, Liheng Zhang, Xinlei Wang, Zhanbing Han, Runzhi Wang, Mingjun Yang, Peiyao Liu, Zhen Zhang

published 25 Jul 2024

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TabDEG: Classifying differentially expressed genes from RNA-seq data based on feature extraction and deep learning framework

Sifan Feng, Zhenyou Wang, Yinghua Jin, Shengbin Xu

published 22 Jul 2024

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Overexpression of miR-200s inhibits proliferation and invasion while increasing apoptosis in murine ovarian cancer cells

Resh Carter, Jim J. Petrik, Roger A. Moorehead

published 19 Jul 2024

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Differentially expressed heterogeneous overdispersion genes testing for count data

Yubai Yuan, Qi Xu, Agaz Wani, Jan Dahrendorff, Chengqi Wang, Arlina Shen, Janelle Donglasan, Sarah Burgan, Zachary Graham, Monica Uddin, Derek Wildman, Annie Qu

published 17 Jul 2024

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A cell competition system with one gene expression from a single-copy gene in one cell

Yoshinori Hasegawa, Megumi Nakano, Tsutomu Hosouchi, Takashi Watanabe, Izumi Yamaguchi, Manabu Nakayama, Osamu Ohara

published 05 Jul 2024

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