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RNA sequencing

The anti-tumor activity of tangeretin in esophageal squamous cell carcinoma by inhibiting GLI2-mediated transcription of GPNMB

Dong Yang, Quan Zhang, Haoyong Kuang, Jian Liu, Sen Wu, Li Wei, Wenjian Yao

published 26 Jun 2024

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Platelet-derived microvesicles isolated from type-2 diabetes mellitus patients harbour an altered miRNA signature and drive MDA-MB-231 triple-negative breast cancer cell invasion

Anca Tutuianu, Chinedu A. Anene, Mikayla Shelton, Valerie Speirs, Donald C. Whitelaw, Joanne Thorpe, Wayne Roberts, James R. Boyne

published 20 Jun 2024

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Unraveling the impact of AXIN1 mutations on HCC development: Insights from CRISPR/Cas9 repaired AXIN1-mutant liver cancer cell lines

Ruyi Zhang, Shanshan Li, Kelly Schippers, Boaz Eimers, Jiahui Niu, Bastian V. H. Hornung, Mirjam C. G. N. van den Hout, Wilfred F. J. van Ijcken, Maikel P. Peppelenbosch, Ron Smits

published 07 Jun 2024

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Effects of eicosapentaneoic acid on innate immune responses in an Atlantic salmon kidney cell line in vitro

Tor Gjøen, Bente Ruyter, Tone Kari Østbye

published 28 May 2024

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Genome-wide analysis of long noncoding RNAs as cis-acting regulators of transcription factor-encoding genes in IgA nephropathy

Yaling Zhai, Huijuan Tian, Wenhui Zhang, Shuaigang Sun, Zhanzheng Zhao

published 24 May 2024

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Efficient wastewater sample filtration improves the detection of SARS-CoV-2 variants: An extensive analysis based on sequencing parameters

Angelo Robotto, Carlotta Olivero, Elisa Pozzi, Claudia Strumia, Camilla Crasà, Cristina Fedele, Maddalena Derosa, Massimo Di Martino, Stefania Latino, Giada Scorza, Andrea Civra, David Lembo, Paola Quaglino, Enrico Brizio, Denis Polato

published 24 May 2024

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An NGS-based assay for accurate detection and quantification of immune gene expression in mouse tumor models

Jia Xue, Xiaobo Chen, Xiaoyu An, Jingjing Wang, Mingfa Zang, Binchen Mao, Sheng Guo, Tao Yang, Rajendra Kumari, Qi-Xiang Li

published 20 May 2024

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RNA sequencing provides novel insights into the pathogenesis of naturally occurring myxomatous mitral valve disease stage B1 in beagle dogs

Tae-Seok Kim, Chae-Yeon Hong, Seong-Ju Oh, Yong-Ho Choe, Tae-Sung Hwang, Jaemin Kim, Sung-Lim Lee, Hakyoung Yoon, Eun-Yeong Bok, A-ra Cho, Yoon Jung Do, Eunju Kim

published 16 May 2024

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Exploring novel immunotherapy biomarker candidates induced by cancer deformation

Se Min Kim, Namu Park, Hye Bin Park, JuKyung Lee, Changho Chun, Kyung Hoon Kim, Jong Seob Choi, Hyung Jin Kim, Sekyu Choi, Jung Hyun Lee

published 14 May 2024

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Explainable machine learning approach for cancer prediction through binarilization of RNA sequencing data

Tianjie Chen, Md Faisal Kabir

published 10 May 2024

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Zmiz1 is a novel regulator of lymphatic endothelial cell gene expression and function

Rajan K. C., Nehal R. Patel, Anoushka Shenoy, Joshua P. Scallan, Mark Y. Chiang, Maria J. Galazo, Stryder M. Meadows

published 08 May 2024

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Annotation of nuclear lncRNAs based on chromatin interactions

Saumya Agrawal, Andrey Buyan, Jessica Severin, Masaru Koido, Tanvir Alam, Imad Abugessaisa, Howard Y. Chang, Josée Dostie, Masayoshi Itoh, Juha Kere, Naoto Kondo, Yunjing Li, Vsevolod J. Makeev, Mickaël Mendez, Yasushi Okazaki, Jordan A. Ramilowski, Andrey I. Sigorskikh, Lisa J. Strug, Ken Yagi, Kayoko Yasuzawa, Chi Wai Yip, Chung Chau Hon, Michael M. Hoffman, Chikashi Terao, Ivan V. Kulakovskiy, Takeya Kasukawa, Jay W. Shin, Piero Carninci, Michiel J. L. de Hoon

published 06 May 2024

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Performance of amplicon and capture based next-generation sequencing approaches for the epidemiological surveillance of Omicron SARS-CoV-2 and other variants of concern

Carlos Daviña-Núñez, Sonia Pérez, Jorge Julio Cabrera-Alvargonzález, Anniris Rincón-Quintero, Ana Treinta-Álvarez, Montse Godoy-Diz, Silvia Suárez-Luque, Benito Regueiro-García

published 29 Apr 2024

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