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RNA sequencing

Genome-wide analysis of long noncoding RNAs as cis-acting regulators of transcription factor-encoding genes in IgA nephropathy

Yaling Zhai, Huijuan Tian, Wenhui Zhang, Shuaigang Sun, Zhanzheng Zhao

published 24 May 2024

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Efficient wastewater sample filtration improves the detection of SARS-CoV-2 variants: An extensive analysis based on sequencing parameters

Angelo Robotto, Carlotta Olivero, Elisa Pozzi, Claudia Strumia, Camilla Crasà, Cristina Fedele, Maddalena Derosa, Massimo Di Martino, Stefania Latino, Giada Scorza, Andrea Civra, David Lembo, Paola Quaglino, Enrico Brizio, Denis Polato

published 24 May 2024

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An NGS-based assay for accurate detection and quantification of immune gene expression in mouse tumor models

Jia Xue, Xiaobo Chen, Xiaoyu An, Jingjing Wang, Mingfa Zang, Binchen Mao, Sheng Guo, Tao Yang, Rajendra Kumari, Qi-Xiang Li

published 20 May 2024

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RNA sequencing provides novel insights into the pathogenesis of naturally occurring myxomatous mitral valve disease stage B1 in beagle dogs

Tae-Seok Kim, Chae-Yeon Hong, Seong-Ju Oh, Yong-Ho Choe, Tae-Sung Hwang, Jaemin Kim, Sung-Lim Lee, Hakyoung Yoon, Eun-Yeong Bok, A-ra Cho, Yoon Jung Do, Eunju Kim

published 16 May 2024

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Exploring novel immunotherapy biomarker candidates induced by cancer deformation

Se Min Kim, Namu Park, Hye Bin Park, JuKyung Lee, Changho Chun, Kyung Hoon Kim, Jong Seob Choi, Hyung Jin Kim, Sekyu Choi, Jung Hyun Lee

published 14 May 2024

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Explainable machine learning approach for cancer prediction through binarilization of RNA sequencing data

Tianjie Chen, Md Faisal Kabir

published 10 May 2024

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Zmiz1 is a novel regulator of lymphatic endothelial cell gene expression and function

Rajan K. C., Nehal R. Patel, Anoushka Shenoy, Joshua P. Scallan, Mark Y. Chiang, Maria J. Galazo, Stryder M. Meadows

published 08 May 2024

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Annotation of nuclear lncRNAs based on chromatin interactions

Saumya Agrawal, Andrey Buyan, Jessica Severin, Masaru Koido, Tanvir Alam, Imad Abugessaisa, Howard Y. Chang, Josée Dostie, Masayoshi Itoh, Juha Kere, Naoto Kondo, Yunjing Li, Vsevolod J. Makeev, Mickaël Mendez, Yasushi Okazaki, Jordan A. Ramilowski, Andrey I. Sigorskikh, Lisa J. Strug, Ken Yagi, Kayoko Yasuzawa, Chi Wai Yip, Chung Chau Hon, Michael M. Hoffman, Chikashi Terao, Ivan V. Kulakovskiy, Takeya Kasukawa, Jay W. Shin, Piero Carninci, Michiel J. L. de Hoon

published 06 May 2024

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Performance of amplicon and capture based next-generation sequencing approaches for the epidemiological surveillance of Omicron SARS-CoV-2 and other variants of concern

Carlos Daviña-Núñez, Sonia Pérez, Jorge Julio Cabrera-Alvargonzález, Anniris Rincón-Quintero, Ana Treinta-Álvarez, Montse Godoy-Diz, Silvia Suárez-Luque, Benito Regueiro-García

published 29 Apr 2024

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A role for a Trypanosoma brucei cytosine RNA methyltransferase homolog in ribosomal RNA processing

Kevin T. Militello, Jennifer Leigh, Matthew Pusateri, Laurie K. Read, Dineen Vogler

published 25 Apr 2024

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Transcriptomic analysis of potato (Solanum tuberosum L.) tuber development reveals new insights into starch biosynthesis

Maryam Shirani-Bidabadi, Farhad Nazarian-Firouzabadi, Karim Sorkheh, Ahmad Ismaili

published 04 Apr 2024

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Whole transcriptome sequencing analyses of islets reveal ncRNA regulatory networks underlying impaired insulin secretion and increased β-cell mass in high fat diet-induced diabetes mellitus

Jinfang Ma, Rui Gao, Qingxing Xie, Xiaohui Pan, Nanwei Tong

published 01 Apr 2024

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Study protocol: Identifying transcriptional regulatory alterations of chronic effects of blast and disturbed sleep in United States Veterans

Molly J. Sullan, Kelly A. Stearns-Yoder, Zhaoyu Wang, Andrew J. Hoisington, Adam D. Bramoweth, Walter Carr, Yongchao Ge, Hanga Galfalvy, Fatemah Haghighi, Lisa A. Brenner

published 27 Mar 2024

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