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RNA analysis

Whole blood RNA extraction efficiency contributes to variability in RNA sequencing data sets

William W. Wilfinger, Hamid R. Eghbalnia, Karol Mackey, Robert Miller, Piotr Chomczynski

published 16 Nov 2023

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A novel f-divergence based generative adversarial imputation method for scRNA-seq data analysis

Tong Si, Zackary Hopkins, John Yanev, Jie Hou, Haijun Gong

published 10 Nov 2023

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RNA-seq RNAaccess identified as the preferred method for gene expression analysis of low quality FFPE samples

Kai Song, Emon Elboudwarej, Xi Zhao, Luting Zhuo, David Pan, Jinfeng Liu, Carrie Brachmann, Scott D. Patterson, Oh Kyu Yoon, Marianna Zavodovskaya

published 26 Oct 2023

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Scikick: A sidekick for workflow clarity and reproducibility during extensive data analysis

Matthew Carlucci, Tadas Bareikis, Karolis Koncevičius, Povilas Gibas, Algimantas Kriščiūnas, Art Petronis, Gabriel Oh

published 27 Jul 2023

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Expression analysis of box C/D snoRNAs with SNPs between C57BL/6 and MSM/Ms strains in male mouse

Rumiko Saito, Maina Otsu, Hidenori Kiyosawa, Gota Kawai

published 10 Jul 2023

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Identification of curaxin as a potential new therapeutic for JAK2 V617F mutant patients

Stella Pearson, Rognvald Blance, Fei Yan, Ya-Ching Hsieh, Bethany Geary, Fabio M. R. Amaral, Tim C. P. Somervaille, Kristina Kirschner, Anthony D. Whetton, Andrew Pierce

published 30 May 2023

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Association of RNA-modification “writer” genes with prognosis and response to immunotherapy in patients with low-grade glioma

Lupeng Zhang, Chiwen Qu, Chen Shi, Fan Wu, Yifan Tang, Yue Li, Jinlong Li, Huicong Feng, Suye Zhong, Jun Yang, Xiaomin Zeng, Xiaoning Peng

published 17 Jan 2023

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Cystathionine γ-lyase and hydrogen sulfide modulates glucose transporter Glut1 expression via NF-κB and PI3k/Akt in macrophages during inflammation

Alex Cornwell, Samantha Fedotova, Sara Cowan, Alireza Badiei

published 15 Dec 2022

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Detection of cutaneous malignant melanoma using RNA sampled by tape strips: A study protocol

Ida M. Heerfordt, Jeppe D. Andersen, Peter A. Philipsen, Linnea Langhans, Torben Tvedebrink, Grethe Schmidt, Thomas Poulsen, Catharina M. Lerche, Niels Morling, Hans Christian Wulf

published 21 Sep 2022

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Generation of full-length circular RNA libraries for Oxford Nanopore long-read sequencing

Steffen Fuchs, Loélia Babin, Elissa Andraos, Chloé Bessiere, Semjon Willier, Johannes H. Schulte, Christine Gaspin, Fabienne Meggetto

published 07 Sep 2022

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SARS-CoV-2 Delta variant induces enhanced pathology and inflammatory responses in K18-hACE2 mice

Katherine S. Lee, Ting Y. Wong, Brynnan P. Russ, Alexander M. Horspool, Olivia A. Miller, Nathaniel A. Rader, Jerome P. Givi, Michael T. Winters, Zeriel Y. A. Wong, Holly A. Cyphert, James Denvir, Peter Stoilov, Mariette Barbier, Nadia R. Roan, Md. Shahrier Amin, Ivan Martinez, Justin R. Bevere, F. Heath Damron

published 29 Aug 2022

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An approach to quantitate maternal transcripts localized in sea urchin egg cortex using RT-qPCR with accurate normalization

Yulia O. Kipryushina, Mariia A. Maiorova, Konstantin V. Yakovlev

published 16 Jun 2022

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Comprehensive analytical and clinical evaluation of a RNA extraction-free saliva-based molecular assay for SARS-CoV-2

Joost P. H. Schoeber, Juliëtte M. Schlaghecke, Britt M. J. Meuwissen, Mara van Heertum, Adriaan J. C. van den Brule, Anne J. M. Loonen

published 05 May 2022

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