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Proteomes

Assessing the low complexity of protein sequences via the low complexity triangle

Pablo Mier, Miguel A. Andrade-Navarro

published 30 Dec 2020

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The farther the better: Investigating how distance from human self affects the propensity of a peptide to be presented on cell surface by MHC class I molecules, the case of Trypanosoma cruzi

Davide Vergni, Rosanna Gaudio, Daniele Santoni

published 07 Dec 2020

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Proteomics of extracellular vesicles produced by Granulicatella adiacens, which causes infective endocarditis

Sarah A. Alkandari, Radhika G. Bhardwaj, Arjuna Ellepola, Maribasappa Karched

published 20 Nov 2020

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Impact of subinhibitory concentrations of metronidazole on proteome of Clostridioides difficile strains with different levels of susceptibility

Tri-Hanh-Dung Doan, Stéphanie Yen-Nicolaÿ, Marie-Françoise Bernet-Camard, Isabelle Martin-Verstraete, Séverine Péchiné

published 09 Nov 2020

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dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data

Jianhong Ou, Haibo Liu, Niraj K. Nirala, Alexey Stukalov, Usha Acharya, Michael R. Green, Lihua Julie Zhu

published 06 Nov 2020

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Comparative proteomics analysis of dietary restriction in Drosophila

Yue Gao, Chenxing Zhu, Keqin Li, Xingyi Cheng, Yanjiao Du, Deying Yang, Xiaolan Fan, Uma Gaur, Mingyao Yang

published 16 Oct 2020

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Computational assessment of the feasibility of protonation-based protein sequencing

Giles Miclotte, Koen Martens, Jan Fostier

published 11 Sep 2020

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New label-free methods for protein relative quantification applied to the investigation of an animal model of Huntington Disease

Flora Cozzolino, Alfredo Landolfi, Ilaria Iacobucci, Vittoria Monaco, Marianna Caterino, Simona Celentano, Chiara Zuccato, Elena Cattaneo, Maria Monti

published 04 Sep 2020

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Immiscible inclusion bodies formed by polyglutamine and poly(glycine-alanine) are enriched with distinct proteomes but converge in proteins that are risk factors for disease and involved in protein degradation

Mona Radwan, Jordan D. Lilley, Ching-Seng Ang, Gavin E. Reid, Danny M. Hatters

published 28 Aug 2020

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Extracellular vesicles from human plasma and serum are carriers of extravesicular cargo—Implications for biomarker discovery

Mari Palviainen, Mayank Saraswat, Zoltán Varga, Diána Kitka, Maarit Neuvonen, Maija Puhka, Sakari Joenväärä, Risto Renkonen, Rienk Nieuwland, Maarit Takatalo, Pia R. M. Siljander

published 19 Aug 2020

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Maternal environment alters dead pericarp biochemical properties of the desert annual plant Anastatica hierochuntica L.

Janardan Khadka, Buzi Raviv, Bupur Swetha, Rohith Grandhi, Jeevan R. Singiri, Nurit Novoplansky, Yitzchak Gutterman, Ivan Galis, Zhenying Huang, Gideon Grafi

published 31 Jul 2020

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Plasma proteomic profiling suggests an association between antigen driven clonal B cell expansion and ME/CFS

Milica Milivojevic, Xiaoyu Che, Lucinda Bateman, Aaron Cheng, Benjamin A. Garcia, Mady Hornig, Manuel Huber, Nancy G. Klimas, Bohyun Lee, Hyoungjoo Lee, Susan Levine, Jose G. Montoya, Daniel L. Peterson, Anthony L. Komaroff, W. Ian Lipkin

published 21 Jul 2020

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The genome, transcriptome, and proteome of the fish parasite Pomphorhynchus laevis (Acanthocephala)

Katharina Mauer, Sören Lukas Hellmann, Marco Groth, Andreas C. Fröbius, Hans Zischler, Thomas Hankeln, Holger Herlyn

published 23 Jun 2020

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