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Protein structure databases

PSPP: A Protein Structure Prediction Pipeline for Computing Clusters

Michael S. Lee, Rajkumar Bondugula, [ ... ], Jaques Reifman

A Sequence and Structure Based Method to Predict Putative Substrates, Functions and Regulatory Networks of Endo Proteases

Prasanna Venkatraman, Satish Balakrishnan, [ ... ], Suyog Pol

An Estimate of the Numbers and Density of Low-Energy Structures (or Decoys) in the Conformational Landscape of Proteins

Kanagasabai Vadivel, Gautham Namasivayam

A Database of Domain Definitions for Proteins with Complex Interdomain Geometry

Indraneel Majumdar, Lisa N. Kinch, Nick V. Grishin

Three New Structures of Left-Handed RadA Helical Filaments: Structural Flexibility of N-Terminal Domain Is Critical for Recombinase Activity

Yu-Wei Chang, Tzu-Ping Ko, [ ... ], Ting-Fang Wang

Structural Model of the Rev Regulatory Protein from Equine Infectious Anemia Virus

Yungok Ihm, Wendy O. Sparks, [ ... ], Drena Dobbs

Contextual Specificity in Peptide-Mediated Protein Interactions

Amelie Stein, Patrick Aloy

MemBrain: Improving the Accuracy of Predicting Transmembrane Helices

Hongbin Shen, James J. Chou

De-Orphaning the Structural Proteome through Reciprocal Comparison of Evolutionarily Important Structural Features

R. Matthew Ward, Serkan Erdin, [ ... ], Olivier Lichtarge

Automated Builder and Database of Protein/Membrane Complexes for Molecular Dynamics Simulations

Sunhwan Jo, Taehoon Kim, Wonpil Im

Efficient Identification of Critical Residues Based Only on Protein Structure by Network Analysis

Michael P. Cusack, Boris Thibert, Dale E. Bredesen, Gabriel del Rio

Towards Alignment Independent Quantitative Assessment of Homology Detection

Avihay Apatoff, Eddo Kim, Yossef Kliger

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