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Protein structure databases

A Topological Framework for the Computation of the HOMFLY Polynomial and Its Application to Proteins

Federico Comoglio, Maurizio Rinaldi

Assignment of PolyProline II Conformation and Analysis of Sequence – Structure Relationship

Yohann Mansiaux, Agnel Praveen Joseph, Jean-Christophe Gelly, Alexandre G. de Brevern

Identification of Local Conformational Similarity in Structurally Variable Regions of Homologous Proteins Using Protein Blocks

Garima Agarwal, Swapnil Mahajan, Narayanaswamy Srinivasan, Alexandre G. de Brevern

Structure and Function of the First Full-Length Murein Peptide Ligase (Mpl) Cell Wall Recycling Protein

Debanu Das, Mireille Hervé, [ ... ], Ian A. Wilson

TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery

Yi-An Chen, Lokesh P. Tripathi, Kenji Mizuguchi

Identification of Human IKK-2 Inhibitors of Natural Origin (Part I): Modeling of the IKK-2 Kinase Domain, Virtual Screening and Activity Assays

Esther Sala, Laura Guasch, [ ... ], Gerard Pujadas

Understanding TR Binding to pMHC Complexes: How Does a TR Scan Many pMHC Complexes yet Preferentially Bind to One

Javed Mohammed Khan, Shoba Ranganathan

Incorporation of Local Structural Preference Potential Improves Fold Recognition

Yun Hu, Xiaoxi Dong, [ ... ], Taijiao Jiang

Large Proteins Have a Great Tendency to Aggregate but a Low Propensity to Form Amyloid Fibrils

Hassan Ramshini, Claudia Parrini, [ ... ], Fabrizio Chiti

The Combined Effects of Amino Acid Substitutions and Indels on the Evolution of Structure within Protein Families

Zheng Zhang, Yuxiao Wang, Lushan Wang, Peiji Gao

Symmetric Key Structural Residues in Symmetric Proteins with Beta-Trefoil Fold

Jianhui Feng, Mingfeng Li, Yanzhao Huang, Yi Xiao

Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized

Thomas Hamelryck, Mikael Borg, [ ... ], Jesper Ferkinghoff-Borg

Structural Studies of the Tandem Tudor Domains of Fragile X Mental Retardation Related Proteins FXR1 and FXR2

Melanie A. Adams-Cioaba, Yahong Guo, [ ... ], Jinrong Min

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