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Protein sequencing

In vitro and molecular modeling insights into α-amylase inhibition by tamarind seed-derived trypsin inhibitor: Implications for hyperglycemic control

Larissa Aida Lemos de Souza, Caio Patrício de Souza Sena, Felipe Carlos de Macêdo Oliveira, Raphael Paschoal Serquiz, Ana Júlia Felipe Camelo Aguiar, Amanda Maria de Souza Nascimento, Ana Karoliny Xavier de Gois Silva, Rose de Paiva Chaves, Anna Beatriz Santana Luz, Thaís Souza Passos, Davi Serradella Vieira, Ana Heloneida de Araujo Morais

published 29 Sep 2025

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Framework for analyzing MAE-derived immunopeptidomes from cell lines with shared HLA haplotypes

Queenie W. T. Chan, Teesha C. Baker, Chia-Wei Kuan, Lucy Song, Hongbing Yu, Leonard J. Foster

published 25 Sep 2025

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Bag-of-words is competitive with sum-of-embeddings language-inspired representations on protein inference

Frixos Papadopoulos, Tilman Sanchez-Elsner, Mahesan Niranjan, Ashley I. Heinson

published 06 Aug 2025

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Cysteine pattern barcoding-based dataset filtration enhances the machine learning-assisted interpretation of Conus venom peptide therapeutics

Rimsha Bibi, Noshaba Qasmi, Sajid Rashid

published 11 Jul 2025

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Machine learning application to predict binding affinity between peptide containing non-canonical amino acids and HLA-A0201

Shan Jiang, Zhaoqian Su, Nathaniel Bloodworth, Yunchao Liu, Cristina E. Martina, David G. Harrison, Jens Meiler

published 27 Jun 2025

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Global genetic diversity of Infectious Salmon Anemia Virus (ISAV) a scoping review protocol

Persia Carol Thapa, Ahsan Raquib, Kim Mears, Javier Sanchez, Sonja Saksida, Keith Larry Hammell, Krishna Kumar Thakur

published 17 Jun 2025

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A descriptor-free machine learning framework to improve antigen discovery for bacterial pathogens

Marco Podda, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Alina Sîrbu, Corrado Priami, Alessandro Brozzi

published 05 Jun 2025

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Binding of transmissible gastroenteritis virus and porcine respiratory coronavirus to human and porcine aminopeptidase N receptors as an indicator of cross-species transmission

Mykyta Peka, Viktor Balatsky

published 27 May 2025

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Assessing the generalization capabilities of TCR binding predictors via peptide distance analysis

Leonardo V. Castorina, Filippo Grazioli, Pierre Machart, Anja Mösch, Federico Errica

published 20 May 2025

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iProtDNA-SMOTE: Enhancing protein-DNA binding sites prediction through imbalanced graph neural networks

Ruiyan Huang, Wangren Qiu, Xuan Xiao, Weizhong Lin

published 13 May 2025

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Epidemiological investigation and analysis of the genetic evolution of duck circovirus in China, 2022

Peidong Li, Fuyou Zhang, Chunyang Bao, Hongmei Liu, Kai Yu, Hao Zhu, Xue Wang, Ke Shen, Tianyao Yang, Qingqing Song, Zhaoyang Li, Chunguo Liu

published 09 May 2025

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Finding patterns in lung cancer protein sequences for drug repurposing

Belén Otero-Carrasco, Paloma Tejera Nevado, Rafael Artiñano Muñoz, Gema Díaz Ferreiro, Aurora Pérez Pérez, Juan Pedro Caraça-Valente Hernández, Alejandro Rodríguez-González

published 07 May 2025

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SORFPP: Enhancing rich sequence-driven information to identify SEPs based on fused framework on validation datasets

Hongqi Feng, Qi Nie, Sen Yang

published 28 Apr 2025

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