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Protein sequencing

Global genetic diversity of Infectious Salmon Anemia Virus (ISAV) a scoping review protocol

Persia Carol Thapa, Ahsan Raquib, Kim Mears, Javier Sanchez, Sonja Saksida, Keith Larry Hammell, Krishna Kumar Thakur

published 17 Jun 2025

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A descriptor-free machine learning framework to improve antigen discovery for bacterial pathogens

Marco Podda, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Alina Sîrbu, Corrado Priami, Alessandro Brozzi

published 05 Jun 2025

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Binding of transmissible gastroenteritis virus and porcine respiratory coronavirus to human and porcine aminopeptidase N receptors as an indicator of cross-species transmission

Mykyta Peka, Viktor Balatsky

published 27 May 2025

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Assessing the generalization capabilities of TCR binding predictors via peptide distance analysis

Leonardo V. Castorina, Filippo Grazioli, Pierre Machart, Anja Mösch, Federico Errica

published 20 May 2025

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iProtDNA-SMOTE: Enhancing protein-DNA binding sites prediction through imbalanced graph neural networks

Ruiyan Huang, Wangren Qiu, Xuan Xiao, Weizhong Lin

published 13 May 2025

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Epidemiological investigation and analysis of the genetic evolution of duck circovirus in China, 2022

Peidong Li, Fuyou Zhang, Chunyang Bao, Hongmei Liu, Kai Yu, Hao Zhu, Xue Wang, Ke Shen, Tianyao Yang, Qingqing Song, Zhaoyang Li, Chunguo Liu

published 09 May 2025

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Finding patterns in lung cancer protein sequences for drug repurposing

Belén Otero-Carrasco, Paloma Tejera Nevado, Rafael Artiñano Muñoz, Gema Díaz Ferreiro, Aurora Pérez Pérez, Juan Pedro Caraça-Valente Hernández, Alejandro Rodríguez-González

published 07 May 2025

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SORFPP: Enhancing rich sequence-driven information to identify SEPs based on fused framework on validation datasets

Hongqi Feng, Qi Nie, Sen Yang

published 28 Apr 2025

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Optimizing lipocalin sequence classification with ensemble deep learning models

Yonglin Zhang, Lezheng Yu, Li Xue, Fengjuan Liu, Runyu Jing, Jiesi Luo

published 16 Apr 2025

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Drug target affinity prediction based on multi-scale gated power graph and multi-head linear attention mechanism

Shuo Hu, Jing Hu, Xiaolong Zhang, Shuting Jin, Xin Xu

published 21 Feb 2025

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Genetic tracking of Crimean-Congo haemorrhagic orthonairovirus in Hyalomma population infesting cattle in Nigeria

Oluwafemi Babatunde Daodu, Joseph Ojonugwa Shaibu, Rosemary Ajuma Audu, Daniel Oladimeji Oluwayelu

published 24 Jan 2025

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Site-specific prediction of O-GlcNAc modification in proteins using evolutionary scale model

Ayesha Khalid, Afshan Kaleem, Wajahat Qazi, Roheena Abdullah, Mehwish Iqtedar, Shagufta Naz

published 31 Dec 2024

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Bioinformatics analysis of myelin-microbe interactions suggests multiple types of molecular mimicry in the pathogenesis of multiple sclerosis

Ali Bigdeli, Mostafa Ghaderi-Zefrehei, Bluma J. Lesch, Mehrdad Behmanesh, S. Shahriar Arab

published 30 Dec 2024

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