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Protein sequencing

Assessing the generalization capabilities of TCR binding predictors via peptide distance analysis

Leonardo V. Castorina, Filippo Grazioli, Pierre Machart, Anja Mösch, Federico Errica

published 20 May 2025

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iProtDNA-SMOTE: Enhancing protein-DNA binding sites prediction through imbalanced graph neural networks

Ruiyan Huang, Wangren Qiu, Xuan Xiao, Weizhong Lin

published 13 May 2025

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Epidemiological investigation and analysis of the genetic evolution of duck circovirus in China, 2022

Peidong Li, Fuyou Zhang, Chunyang Bao, Hongmei Liu, Kai Yu, Hao Zhu, Xue Wang, Ke Shen, Tianyao Yang, Qingqing Song, Zhaoyang Li, Chunguo Liu

published 09 May 2025

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Finding patterns in lung cancer protein sequences for drug repurposing

Belén Otero-Carrasco, Paloma Tejera Nevado, Rafael Artiñano Muñoz, Gema Díaz Ferreiro, Aurora Pérez Pérez, Juan Pedro Caraça-Valente Hernández, Alejandro Rodríguez-González

published 07 May 2025

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SORFPP: Enhancing rich sequence-driven information to identify SEPs based on fused framework on validation datasets

Hongqi Feng, Qi Nie, Sen Yang

published 28 Apr 2025

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Drug target affinity prediction based on multi-scale gated power graph and multi-head linear attention mechanism

Shuo Hu, Jing Hu, Xiaolong Zhang, Shuting Jin, Xin Xu

published 21 Feb 2025

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Genetic tracking of Crimean-Congo haemorrhagic orthonairovirus in Hyalomma population infesting cattle in Nigeria

Oluwafemi Babatunde Daodu, Joseph Ojonugwa Shaibu, Rosemary Ajuma Audu, Daniel Oladimeji Oluwayelu

published 24 Jan 2025

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Site-specific prediction of O-GlcNAc modification in proteins using evolutionary scale model

Ayesha Khalid, Afshan Kaleem, Wajahat Qazi, Roheena Abdullah, Mehwish Iqtedar, Shagufta Naz

published 31 Dec 2024

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Bioinformatics analysis of myelin-microbe interactions suggests multiple types of molecular mimicry in the pathogenesis of multiple sclerosis

Ali Bigdeli, Mostafa Ghaderi-Zefrehei, Bluma J. Lesch, Mehrdad Behmanesh, S. Shahriar Arab

published 30 Dec 2024

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Evaluation of VP4-VP2 sequencing for molecular typing of human enteroviruses

Kouichi Kitamura, Minetaro Arita

published 10 Dec 2024

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A percolation theory analysis of continuous functional paths in protein sequence space affirms previous insights on the optimization of proteins for adaptability

Brian J. Miller

published 05 Dec 2024

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StackIL10: A stacking ensemble model for the improved prediction of IL-10 inducing peptides

Izaz Ahmmed Tuhin, Md. Rajib Mia, Md. Monirul Islam, Imran Mahmud, Henry Fabian Gongora, Carlos Uc Rios, Imran Ashraf, Md. Abdus Samad

published 14 Nov 2024

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PredIL13: Stacking a variety of machine and deep learning methods with ESM-2 language model for identifying IL13-inducing peptides

Hiroyuki Kurata, Md. Harun-Or-Roshid, Sho Tsukiyama, Kazuhiro Maeda

published 22 Aug 2024

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