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Protein sequencing

Bag-of-words is competitive with sum-of-embeddings language-inspired representations on protein inference

Frixos Papadopoulos, Tilman Sanchez-Elsner, Mahesan Niranjan, Ashley I. Heinson

Cysteine pattern barcoding-based dataset filtration enhances the machine learning-assisted interpretation of Conus venom peptide therapeutics

Rimsha Bibi, Noshaba Qasmi, Sajid Rashid

Machine learning application to predict binding affinity between peptide containing non-canonical amino acids and HLA-A0201

Shan Jiang, Zhaoqian Su, [ ... ], Jens Meiler

Global genetic diversity of Infectious Salmon Anemia Virus (ISAV) a scoping review protocol

Persia Carol Thapa, Ahsan Raquib, [ ... ], Krishna Kumar Thakur

A descriptor-free machine learning framework to improve antigen discovery for bacterial pathogens

Marco Podda, Castrense Savojardo, [ ... ], Alessandro Brozzi

Binding of transmissible gastroenteritis virus and porcine respiratory coronavirus to human and porcine aminopeptidase N receptors as an indicator of cross-species transmission

Mykyta Peka, Viktor Balatsky

Assessing the generalization capabilities of TCR binding predictors via peptide distance analysis

Leonardo V. Castorina, Filippo Grazioli, [ ... ], Federico Errica

iProtDNA-SMOTE: Enhancing protein-DNA binding sites prediction through imbalanced graph neural networks

Ruiyan Huang, Wangren Qiu, Xuan Xiao, Weizhong Lin

Epidemiological investigation and analysis of the genetic evolution of duck circovirus in China, 2022

Peidong Li, Fuyou Zhang, [ ... ], Chunguo Liu

Finding patterns in lung cancer protein sequences for drug repurposing

Belén Otero-Carrasco, Paloma Tejera Nevado, [ ... ], Alejandro Rodríguez-González

SORFPP: Enhancing rich sequence-driven information to identify SEPs based on fused framework on validation datasets

Hongqi Feng, Qi Nie, Sen Yang

Optimizing lipocalin sequence classification with ensemble deep learning models

Yonglin Zhang, Lezheng Yu, [ ... ], Jiesi Luo

Drug target affinity prediction based on multi-scale gated power graph and multi-head linear attention mechanism

Shuo Hu, Jing Hu, [ ... ], Xin Xu

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