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Protein sequencing

Classification of virulence factors based on dual-channel neural networks with pre-trained language models

Guanghui Li, Peiyang Song, Jiawei Luo, Cheng Liang

A methodology for calculating the rarity of diverse proteins based on functional specificity and thermodynamic stability

Brian J. Miller

Evaluating machine learning approaches for host prediction using H3 influenza genomic data

Hoc Tran, Olaf Berke, Nicole Ricker, Zvonimir Poljak

Machine learning reveals distinct T-cell receptor clusters in plasma cell dyscrasias compared to healthy controls

David G. Coffey, Yong Zhang, [ ... ], Dickran Kazandjian

Investigating the evolutionary dynamics and mutational pattern of SARS-CoV-2 spike gene on selected SARS-CoV-2 variants

Bachir Balech, Alessandra Lo Presti, [ ... ], on behalf of the Italian Genomic Laboratory Network

In vitro and molecular modeling insights into α-amylase inhibition by tamarind seed-derived trypsin inhibitor: Implications for hyperglycemic control

Larissa Aida Lemos de Souza, Caio Patrício de Souza Sena, [ ... ], Ana Heloneida de Araujo Morais

Framework for analyzing MAE-derived immunopeptidomes from cell lines with shared HLA haplotypes

Queenie W. T. Chan, Teesha C. Baker, [ ... ], Leonard J. Foster

Bag-of-words is competitive with sum-of-embeddings language-inspired representations on protein inference

Frixos Papadopoulos, Tilman Sanchez-Elsner, Mahesan Niranjan, Ashley I. Heinson

Cysteine pattern barcoding-based dataset filtration enhances the machine learning-assisted interpretation of Conus venom peptide therapeutics

Rimsha Bibi, Noshaba Qasmi, Sajid Rashid

Machine learning application to predict binding affinity between peptide containing non-canonical amino acids and HLA-A0201

Shan Jiang, Zhaoqian Su, [ ... ], Jens Meiler

Global genetic diversity of Infectious Salmon Anemia Virus (ISAV) a scoping review protocol

Persia Carol Thapa, Ahsan Raquib, [ ... ], Krishna Kumar Thakur

A descriptor-free machine learning framework to improve antigen discovery for bacterial pathogens

Marco Podda, Castrense Savojardo, [ ... ], Alessandro Brozzi

Binding of transmissible gastroenteritis virus and porcine respiratory coronavirus to human and porcine aminopeptidase N receptors as an indicator of cross-species transmission

Mykyta Peka, Viktor Balatsky

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