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Plasmids

Enabling low-cost and robust essentiality studies with high-throughput transposon mutagenesis (HTTM)

Antoine Champie, Amélie De Grandmaison, Simon Jeanneau, Frédéric Grenier, Pierre-Étienne Jacques, Sébastien Rodrigue

published 11 Apr 2023

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Classification of bacterial plasmid and chromosome derived sequences using machine learning

Xiaohui Zou, Marcus Nguyen, Jamie Overbeek, Bin Cao, James J. Davis

published 16 Dec 2022

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Fecal carriage and clonal dissemination of bla_NDM-1 carrying Klebsiella pneumoniae sequence type 147 at an intensive care unit in Lao PDR

Tsegaye Sewunet, Sriram K. K., Ha Hoang Nguyen, Noikaseumsy Sithivong, Ngoc Thi Bich Hoang, Vanphanom Sychareun, Kokasia Nengmongvang, Mattias Larsson, Linus Olson, Fredrik Westerlund, Christian G. Giske

published 04 Oct 2022

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Whole-genome sequence analysis of high-level penicillin-resistant strains and antimicrobial susceptibility of Neisseria gonorrhoeae clinical isolates from Thailand

Natakorn Nokchan, Thidathip Wongsurawat, Piroon Jenjaroenpun, Perapon Nitayanon, Chanwit Tribuddharat

published 29 Jul 2022

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Sequence analysis and plasmid mobilization of a 6.6-kb kanamycin resistance plasmid, pSNC3-Kan, from a Salmonella enterica serotype Newport isolate

Chin-Yi Chen, Ly-Huong T. Nguyen, Terence P. Strobaugh Jr.

published 14 Jul 2022

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Dissemination of carbapenemase-producing Enterobacterales in the community of Rawalpindi, Pakistan

Amina Habib, Stéphane Lo, Khanh Villageois-Tran, Marie Petitjean, Shaheen Akhtar Malik, Laurence Armand-Lefèvre, Etienne Ruppé, Rabaab Zahra

published 08 Jul 2022

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Transfer dynamics of multi-resistance plasmids in Escherichia coli isolated from meat

Tania S. Darphorn, Belinda B. Koenders-van Sintanneland, Anita E. Grootemaat, Nicole N. van der Wel, Stanley Brul, Benno H. ter Kuile

published 07 Jul 2022

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Virulome and genome analyses identify associations between antimicrobial resistance genes and virulence factors in highly drug-resistant Escherichia coli isolated from veal calves

Bradd J. Haley, Seon Woo Kim, Serajus Salaheen, Ernest Hovingh, Jo Ann S. Van Kessel

published 17 Mar 2022

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Healthcare-associated infections caused by chlorhexidine-tolerant Serratia marcescens carrying a promiscuous IncHI2 multi-drug resistance plasmid in a veterinary hospital

Joanne L. Allen, Nicholas P. Doidge, Rhys N. Bushell, Glenn F. Browning, Marc S. Marenda

published 17 Mar 2022

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Pan-genome and resistome analysis of extended-spectrum ß-lactamase-producing Escherichia coli: A multi-setting epidemiological surveillance study from Malaysia

Jacky Dwiyanto, Jia Wei Hor, Daniel Reidpath, Tin Tin Su, Shaun Wen Huey Lee, Qasim Ayub, Faizah Binti Mustapha, Sui Mae Lee, Su Chern Foo, Chun Wie Chong, Sadequr Rahman

published 10 Mar 2022

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Whole genome sequencing and characteristics of Escherichia coli with co-existence of ESBL and mcr genes from pigs

Suthathip Trongjit, Rungtip Chuanchuen

published 16 Nov 2021

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Detection of structural variations in densely-labelled optical DNA barcodes: A hidden Markov model approach

Albertas Dvirnas, Callum Stewart, Vilhelm Müller, Santosh Kumar Bikkarolla, Karolin Frykholm, Linus Sandegren, Erik Kristiansson, Fredrik Westerlund, Tobias Ambjörnsson

published 05 Nov 2021

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Bacterial persistence is essential for susceptible cell survival in indirect resistance, mainly for lower cell densities

João S. Rebelo, Célia P. F. Domingues, Francisca Monteiro, Teresa Nogueira, Francisco Dionisio

published 02 Sep 2021

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