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Phylogenetics

Phylogenetic diversity of 200+ isolates of the ectomycorrhizal fungus Cenococcum geophilum associated with Populus trichocarpa soils in the Pacific Northwest, USA and comparison to globally distributed representatives

Jessica M. Vélez, Reese M. Morris, Rytas Vilgalys, Jessy Labbé, Christopher W. Schadt

published 06 Jan 2021

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Whole-genome sequence analysis and comparisons between drug-resistance mutations and minimum inhibitory concentrations of Mycobacterium tuberculosis isolates causing M/XDR-TB

Ditthawat Nonghanphithak, Orawee Kaewprasert, Pratchakan Chaiyachat, Wipa Reechaipichitkul, Angkana Chaiprasert, Kiatichai Faksri

published 31 Dec 2020

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Trypanosoma (Herpetosoma) diversity in rodents and lagomorphs of New Mexico with a focus on epizootological aspects of infection in Southern Plains woodrats (Neotoma micropus)

Irina Goodrich, Clifton McKee, Michael Kosoy

published 31 Dec 2020

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Heterogeneous taxonomic resolution of cytochrome b gene identification of bats from Argentina: Implications for field studies

Diego A. Caraballo, María E. Montani, Leila M. Martínez, Leandro R. Antoniazzi, Tomás C. Sambrana, Camilo Fernández, Daniel M. Cisterna, Fernando J. Beltrán, Valeria C. Colombo

published 31 Dec 2020

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On genetic diversity in caraway: Genotyping of a large germplasm collection

Daniel von Maydell, Heike Lehnert, Thomas Berner, Evelyn Klocke, Wolfram Junghanns, Jens Keilwagen, Frank Marthe

published 29 Dec 2020

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Metagenomic sequencing generates the whole genomes of porcine rotavirus A, C, and H from the United States

Jennifer J. A. Hull, Mingpu Qi, Anna M. Montmayeur, Deepak Kumar, Daniel E. Velasquez, Sung-Sil Moon, Laura Cristal Magaña, Naga Betrapally, Terry Fei Fan Ng, Baoming Jiang, Douglas Marthaler

published 29 Dec 2020

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Genome-scale reconstructions to assess metabolic phylogeny and organism clustering

Christian Schulz, Eivind Almaas

published 29 Dec 2020

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Human Metapneumovirus: Epidemiology and genotype diversity in children and adult patients with respiratory infection in Córdoba, Argentina

Pamela Elizabeth Rodriguez, María Celia Frutos, María Pilar Adamo, Cecilia Cuffini, Jorge Augusto Cámara, María Gabriela Paglini, Laura Moreno, Alicia Cámara

published 28 Dec 2020

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Complete chloroplast genome comparisons for Pityopsis (Asteraceae)

E. Anne Hatmaker, Phillip A. Wadl, Timothy A. Rinehart, Jennifer Carroll, Thomas S. Lane, Robert N. Trigiano, Margaret E. Staton, Edward E. Schilling

published 28 Dec 2020

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Genome-based characterization of Escherichia coli causing bloodstream infection through next-generation sequencing

Rafika Indah Paramita, Erni Juwita Nelwan, Fadilah Fadilah, Editha Renesteen, Nelly Puspandari, Linda Erlina

published 23 Dec 2020

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Aster spathulifolius Maxim. a leaf transcriptome provides an overall functional characterization, discovery of SSR marker and phylogeny analysis

Sivagami Jean Claude, SeonJoo Park

published 23 Dec 2020

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Whole genome sequencing of Clostridioides difficile PCR ribotype 046 suggests transmission between pigs and humans

Anders Werner, Paula Mölling, Anna Fagerström, Fredrik Dyrkell, Dimitrios Arnellos, Karin Johansson, Martin Sundqvist, Torbjörn Norén

published 21 Dec 2020

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Genomic epidemiology reveals multiple introductions and spread of SARS-CoV-2 in the Indian state of Karnataka

Chitra Pattabiraman, Farhat Habib, Harsha P. K., Risha Rasheed, Pramada Prasad, Vijayalakshmi Reddy, Prameela Dinesh, Tina Damodar, Kiran Hosallimath, Anson K. George, Nakka Vijay Kiran Reddy, Banerjee John, Amrita Pattanaik, Narendra Kumar, Reeta S. Mani, Manjunatha M. Venkataswamy, Shafeeq K. Shahul Hameed, Prakash Kumar B. G., Anita Desai, Ravi Vasanthapuram

published 17 Dec 2020

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