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Phylogenetics

The Roots of Diversity: Below Ground Species Richness and Rooting Distributions in a Tropical Forest Revealed by DNA Barcodes and Inverse Modeling

F. Andrew Jones, David L. Erickson, Moises A. Bernal, Eldredge Bermingham, W. John Kress, Edward Allen Herre, Helene C. Muller-Landau, Benjamin L. Turner

published 19 Sep 2011

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A New Troodontid Theropod, Talos sampsoni gen. et sp. nov., from the Upper Cretaceous Western Interior Basin of North America

Lindsay E. Zanno, David J. Varricchio, Patrick M. O'Connor, Alan L. Titus, Michael J. Knell

published 19 Sep 2011

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The Plant Pathogen Phytophthora andina Emerged via Hybridization of an Unknown Phytophthora Species and the Irish Potato Famine Pathogen, P. infestans

Erica M. Goss, Martha E. Cardenas, Kevin Myers, Gregory A. Forbes, William E. Fry, Silvia Restrepo, Niklaus J. Grünwald

published 16 Sep 2011

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MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

Vincent Ranwez, Sébastien Harispe, Frédéric Delsuc, Emmanuel J. P. Douzery

published 16 Sep 2011

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Biological Consequences of Ancient Gene Acquisition and Duplication in the Large Genome of Candidatus Solibacter usitatus Ellin6076

Jean F. Challacombe, Stephanie A. Eichorst, Loren Hauser, Miriam Land, Gary Xie, Cheryl R. Kuske

published 15 Sep 2011

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Macroevolutionary Patterns in the Aphidini Aphids (Hemiptera: Aphididae): Diversification, Host Association, and Biogeographic Origins

Hyojoong Kim, Seunghwan Lee, Yikweon Jang

published 15 Sep 2011

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Analysis of the Complete Open Reading Frame of Genotype 2b Hepatitis C Virus in Association with the Response to Peginterferon and Ribavirin Therapy

Makoto Kadokura, Shinya Maekawa, Ryota Sueki, Mika Miura, Kazuki Komase, Hiroko Shindo, Fumitake Amemiya, Tomoyoshi Uetake, Taisuke Inoue, Minoru Sakamoto, Mina Nakagawa, Naoya Sakamoto, Mamoru Watanabe, Nobuyuki Enomoto

published 15 Sep 2011

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Genetic Structure of Human A/H1N1 and A/H3N2 Influenza Virus on Corsica Island: Phylogenetic Analysis and Vaccine Strain Match, 2006–2010

Alessandra Falchi, Jean Pierre Amoros, Christophe Arena, Jean Arrighi, François Casabianca, Laurent Andreoletti, Clément Turbelin, Antoine Flahault, Thierry Blanchon, Thomas Hanslik, Laurent Varesi

published 14 Sep 2011

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A Phylometagenomic Exploration of Oceanic Alphaproteobacteria Reveals Mitochondrial Relatives Unrelated to the SAR11 Clade

Björn Brindefalk, Thijs J. G. Ettema, Johan Viklund, Mikael Thollesson, Siv G. E. Andersson

published 14 Sep 2011

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A New Basal Caniform (Mammalia: Carnivora) from the Middle Eocene of North America and Remarks on the Phylogeny of Early Carnivorans

Susumu Tomiya

published 14 Sep 2011

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A Possible Geographic Origin of Endemic Hepatitis C Virus 6a in Hong Kong: Evidences for the Association with Vietnamese Immigration

Xiaoming Zhou, Paul K. S. Chan, John S. Tam, Julian W. Tang

published 13 Sep 2011

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“Pseudo-Beijing”: Evidence for Convergent Evolution in the Direct Repeat Region of Mycobacterium tuberculosis

Lukas Fenner, Bijaya Malla, Béatrice Ninet, Olivier Dubuis, David Stucki, Sonia Borrell, Thembela Huna, Thomas Bodmer, Matthias Egger, Sebastien Gagneux

published 13 Sep 2011

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Phylogenetic Relationships of the Marine Haplosclerida (Phylum Porifera) Employing Ribosomal (28S rRNA) and Mitochondrial (cox1, nad1) Gene Sequence Data

Niamh E. Redmond, Jean Raleigh, Rob W. M. van Soest, Michelle Kelly, Simon A. A. Travers, Brian Bradshaw, Salla Vartia, Kelly M. Stephens, Grace P. McCormack

published 13 Sep 2011

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