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Phylogenetics

Evaluating machine learning approaches for host prediction using H3 influenza genomic data

Hoc Tran, Olaf Berke, Nicole Ricker, Zvonimir Poljak

published 05 Nov 2025

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Phylogenomics of sigmodontine rodents (Cricetidae: Sigmodontinae): Cloud forests and Pliocene extinction explain the timing and spread of an iconic South American radiation

Max R. Bangs, Alexandre Reis Percequillo, Víctor Pacheco, Scott J. Steppan

published 04 Nov 2025

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Exploring the genetic landscape of the Copper Homeostasis and Silver Resistance Island (CHASRI) in Salmonella enterica

Julie Haendiges, Eric W. Brown, Christina Ferreira, Maria Hoffmann, Elizabeth Reed, Jie Zheng, Rohan Tikekar

published 03 Nov 2025

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More than half a century of evolutionary studies in Rhodnius prolixus Stål, 1859 (Hemiptera, Triatominae): revisiting and discussing old and new data on intra- and interspecific reproductive barriers

Kaio Cesar Chaboli Alevi, Amanda Ravazi, Jader de Oliveira, Yago Visinho dos Reis, Isadora de Freitas Bittinelli, Luiza Maria Grzyb Delgado, Jociel Klleyton Santos Santana, Maria Tercília Vilela de Azeredo-Oliveira, João Aristeu da Rosa, Mauro Toledo Marrelli, Cleber Galvão

published 31 Oct 2025

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Lacrimispora sanguinis sp. nov., isolated from human blood

Hui-Jin Yu, Yun Young Cho, Jayoung Paek, Minhee Kang, Mi Young Ahn, Heejung Kim, Jung-Hyun Byun, Tae Yeul Kim, Hee Jae Huh, Lu Bai, Young-Hyo Chang

published 31 Oct 2025

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DNA barcoding for elasmobranch diversity assessment in Thailand: Its advantages and limitations

Jenjit Khudamrongsawat, Tassapon Krajangdara, Thadsin Panithanarak, Ratima Karuwancharoen, Wanlada Klangnurak, Pattarapon Promnun, Wansuk Senanan

published 31 Oct 2025

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Three new species of Acalypha L. (Euphorbiaceae, Acalyphoideae) from Tanzania and Angola and their conservation status

Iris Montero-Muñoz, José María Cardiel, Lucía Villaescusa-González, Pablo Muñoz-Rodríguez

published 29 Oct 2025

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Comprehensive analysis of proline metabolizing genes reveals their functional diversification and abiotic stress response in Solanum lycopersicum

Md. Afser Rabbi, Md. Muluk Hossain, Md. Rihan Kabir Shuvo, Asifur Rob Bhuya, Ajit Ghosh

published 27 Oct 2025

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Sequencing and analysis of 131 SARS-CoV-2 isolates in previously sampled and unsampled regions of Jordan from 2020 to 2023

Rame Khasawneh, Andrew W. Bartlow, Shirin Almharat, Abdullah Almuhasen, Ali Alhuniti, Lena Hajaya, Al Anood Al Habashneh, Osama Alshudefat, Mohammad Dojan, Abdelghani Tbakhi, Zeena Shaheen, Eiad Atwa, Colin PS Kruse, Osama Alsmadi, Samuel I. Koehler

published 27 Oct 2025

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Curated mitochondrial genome reference database of state key protected wild mammal in China

Xia Huang, Guihua Zhang, Joseph D. Orkin, Shiyun Liu, Shan Jiang, Yinhui Zhao, Pengfei Fan, Lianghua Huang, Xiaoming Zhang, Xueyou Li, Song Li, Kai He

published 23 Oct 2025

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Investigating the evolutionary dynamics and mutational pattern of SARS-CoV-2 spike gene on selected SARS-CoV-2 variants

Bachir Balech, Alessandra Lo Presti, Claudia Telegrafo, Lucia Maisto, Emanuela Giombini, Angela Di Martino, Luigina Ambrosio, Apollonia Tullo, Paola Stefanelli, on behalf of the Italian Genomic Laboratory Network

published 21 Oct 2025

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Genome sequencing and analysis of isolates of Cytospora sorbicola and Cytospora plurivora associated with almond and peach canker

Tawanda E. Maguvu, Rosa J. Frias, Florent P. Trouillas

published 17 Oct 2025

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Evaluating topological variability in Neodermata phylogenies using mitochondrial and ribosomal gene markers

Víctor Hugo Caña-Bozada, Geormery Belén Mera-Loor, David I. Hernández-Mena, Jean-Lou Justine, Marta Álvarez-Presas

published 15 Oct 2025

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