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Phylogenetics

Reticulamoeba Is a Long-Branched Granofilosean (Cercozoa) That Is Missing from Sequence Databases

David Bass, Akinori Yabuki, [ ... ], Cédric Berney

Evolutionary Genomics of Transposable Elements in Saccharomyces cerevisiae

Martin Carr, Douda Bensasson, Casey M. Bergman

Phylogenetic and Pathogenic Analyses of Avian Influenza A H5N1 Viruses Isolated from Poultry in Vietnam

Dongming Zhao, Libin Liang, [ ... ], Hualan Chen

Contribution of Lateral Gene Transfers to the Genome Composition and Parasitic Ability of Root-Knot Nematodes

Julien Paganini, Amandine Campan-Fournier, [ ... ], Etienne G. J. Danchin

Diversification, Biogeographic Pattern, and Demographic History of Taiwanese Scutellaria Species Inferred from Nuclear and Chloroplast DNA

Yu-Chung Chiang, Bing-Hong Huang, Pei-Chun Liao

A Case Study for Effects of Operational Taxonomic Units from Intracellular Endoparasites and Ciliates on the Eukaryotic Phylogeny: Phylogenetic Position of the Haptophyta in Analyses of Multiple Slowly Evolving Genes

Hisayoshi Nozaki, Yi Yang, Shinichiro Maruyama, Toshinobu Suzaki

Taxonomic Richness of Yeasts in Japan within Subtropical and Cool Temperate Areas

Masako Takashima, Takashi Sugita, [ ... ], Moriya Ohkuma

The Recent Recombinant Evolution of a Major Crop Pathogen, Potato virus Y

Johan Christiaan Visser, Dirk Uwe Bellstedt, Michael David Pirie

Different HCV Genotype Distributions of HIV-Infected Individuals in Henan and Guangxi, China

Di Tian, Lin Li, [ ... ], Jingyun Li

Genealogy-Based Methods for Inference of Historical Recombination and Gene Flow and Their Application in Saccharomyces cerevisiae

Paul A. Jenkins, Yun S. Song, Rachel B. Brem

Molecular Evolution of Hemagglutinin (H) Gene in Measles Virus Genotypes D3, D5, D9, and H1

Mika Saitoh, Makoto Takeda, [ ... ], Hirokazu Kimura

Repeatedly Evolved Host-Specific Ectosymbioses between Sulfur-Oxidizing Bacteria and Amphipods Living in a Cave Ecosystem

Jan Bauermeister, Alban Ramette, Sharmishtha Dattagupta

Molecular Evidence Shows Low Species Diversity of Coral-Associated Hydroids in Acropora Corals

Silvia Fontana, Shashank Keshavmurthy, [ ... ], Chaolun Allen Chen

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