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Phylogenetics

Iteratively Refined Guide Trees Help Improving Alignment and Phylogenetic Inference in the Mushroom Family Bolbitiaceae

Annamária Tóth, Anton Hausknecht, [ ... ], László G. Nagy

Effect of Pleistocene Climatic Oscillations on the Phylogeography and Demography of Red Knobby Newt (Tylototriton shanjing) from Southwestern China

Guohua Yu, Mingwang Zhang, Dingqi Rao, Junxing Yang

Phylogenetics and Differentiation of Salmonella Newport Lineages by Whole Genome Sequencing

Guojie Cao, Jianghong Meng, [ ... ], Marc Allard

Phylomemetic Patterns in Science Evolution—The Rise and Fall of Scientific Fields

David Chavalarias, Jean-Philippe Cointet

Old-Growth Platycladus orientalis as a Resource for Reproductive Capacity and Genetic Diversity

Lin Zhu, Anru Lou

New Insights into the Phylogeny and Worldwide Dispersion of Two Closely Related Nematode Species, Bursaphelenchus xylophilus and Bursaphelenchus mucronatus

Filipe Pereira, Cláudia Moreira, [ ... ], António Amorim

Characterization of Capsicum annuum Genetic Diversity and Population Structure Based on Parallel Polymorphism Discovery with a 30K Unigene Pepper GeneChip

Theresa A. Hill, Hamid Ashrafi, [ ... ], Allen Van Deynze

Correlated Evolution of Positions within Mammalian cis Elements

Rithun Mukherjee, Perry Evans, Larry N. Singh, Sridhar Hannenhalli

Phylogenomics and Molecular Signatures for Species from the Plant Pathogen-Containing Order Xanthomonadales

Hafiz Sohail Naushad, Radhey S. Gupta

Species-Specific Identification from Incomplete Sampling: Applying DNA Barcodes to Monitoring Invasive Solanum Plants

Wei Zhang, Xiaohong Fan, [ ... ], Lianzhong Fu

Population Structure of Clinical and Environmental Vibrio parahaemolyticus from the Pacific Northwest Coast of the United States

Jeffrey W. Turner, Rohinee N. Paranjpye, [ ... ], Mark S. Strom

Common Genetic Variants in Wnt Signaling Pathway Genes as Potential Prognostic Biomarkers for Colorectal Cancer

Wen-Chien Ting, Lu-Min Chen, [ ... ], Bo-Ying Bao

Short-Read Assembly of Full-Length 16S Amplicons Reveals Bacterial Diversity in Subsurface Sediments

Christopher S. Miller, Kim M. Handley, [ ... ], Jillian F. Banfield

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