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Phylogenetics

Combining Distance Matrices on Identical Taxon Sets for Multi-Gene Analysis with Singular Value Decomposition

Melanie Abeysundera, Toby Kenney, Chris Field, Hong Gu

published 14 Apr 2014

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Evolution of the F-Box Gene Family in Euarchontoglires: Gene Number Variation and Selection Patterns

Ailan Wang, Mingchuan Fu, Xiaoqian Jiang, Yuanhui Mao, Xiangchen Li, Shiheng Tao

published 11 Apr 2014

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Analysis of Expressed Genes of the Bacterium ‘Candidatus Phytoplasma Mali’ Highlights Key Features of Virulence and Metabolism

Christin Siewert, Toni Luge, Bojan Duduk, Erich Seemüller, Carmen Büttner, Sascha Sauer, Michael Kube

published 11 Apr 2014

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Assessing Trait Covariation and Morphological Integration on Phylogenies Using Evolutionary Covariance Matrices

Dean C. Adams, Ryan N. Felice

published 11 Apr 2014

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Generalization of Entropy Based Divergence Measures for Symbolic Sequence Analysis

Miguel A. Ré, Rajeev K. Azad

published 11 Apr 2014

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Recombination in the Evolution of Enterovirus C Species Sub-Group that Contains Types CVA-21, CVA-24, EV-C95, EV-C96 and EV-C99

Teemu Smura, Soile Blomqvist, Tytti Vuorinen, Olga Ivanova, Elena Samoilovich, Haider Al-Hello, Carita Savolainen-Kopra, Tapani Hovi, Merja Roivainen

published 10 Apr 2014

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On the Validity of Evolutionary Models with Site-Specific Parameters

Konrad Scheffler, Ben Murrell, Sergei L. Kosakovsky Pond

published 10 Apr 2014

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Comparative Population Genomics of the Borrelia burgdorferi Species Complex Reveals High Degree of Genetic Isolation among Species and Underscores Benefits and Constraints to Studying Intra-Specific Epidemiological Processes

Maude Jacquot, Mathieu Gonnet, Elisabeth Ferquel, David Abrial, Alexandre Claude, Patrick Gasqui, Valérie Choumet, Myriam Charras-Garrido, Martine Garnier, Benjamin Faure, Natacha Sertour, Nelly Dorr, Jocelyn De Goër, Gwenaël Vourc'h, Xavier Bailly

published 10 Apr 2014

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Phylogeny of Campanuloideae (Campanulaceae) with Emphasis on the Utility of Nuclear Pentatricopeptide Repeat (PPR) Genes

Andrew A. Crowl, Evgeny Mavrodiev, Guilhem Mansion, Rosemarie Haberle, Annalaura Pistarino, Georgia Kamari, Dimitrios Phitos, Thomas Borsch, Nico Cellinese

published 09 Apr 2014

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Whole Mitochondrial and Plastid Genome SNP Analysis of Nine Date Palm Cultivars Reveals Plastid Heteroplasmy and Close Phylogenetic Relationships among Cultivars

Jamal S. M. Sabir, Dhivya Arasappan, Ahmed Bahieldin, Salah Abo-Aba, Sameera Bafeel, Talal A. Zari, Sherif Edris, Ahmed M. Shokry, Nour O. Gadalla, Ahmed M. Ramadan, Ahmed Atef, Magdy A. Al-Kordy, Fotoh M. El-Domyati, Robert K. Jansen

published 09 Apr 2014

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Molecular Evolution of Glycoside Hydrolase Genes in the Western Corn Rootworm (Diabrotica virgifera virgifera)

Seong-il Eyun, Haichuan Wang, Yannick Pauchet, Richard H. ffrench-Constant, Andrew K. Benson, Arnubio Valencia-Jiménez, Etsuko N. Moriyama, Blair D. Siegfried

published 09 Apr 2014

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Estimating the Timing of Mother-to-Child Transmission of the Human Immunodeficiency Virus Type 1 Using a Viral Molecular Evolution Model

Antoine Chaillon, Tanawan Samleerat, Faustine Zoveda, Sébastien Ballesteros, Alain Moreau, Nicole Ngo-Giang-Huong, Gonzague Jourdain, Sara Gianella, Marc Lallemant, Frantz Depaulis, Francis Barin

published 09 Apr 2014

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Large Spatial Scale of the Phenotype-Environment Color Matching in Two Cryptic Species of African Desert Jerboas (Dipodidae: Jaculus)

Zbyszek Boratyński, José Carlos Brito, João Carlos Campos, Maija Karala, Tapio Mappes

published 08 Apr 2014

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