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Phylogenetics

Molecular detection of dengue virus in patients suspected of Ebola virus disease in Ghana

Joseph Humphrey Kofi Bonney, Takaya Hayashi, Samuel Dadzie, Esinam Agbosu, Deborah Pratt, Stephen Nyarko, Franklin Asiedu-Bekoe, Eiji Ido, Badu Sarkodie, Nobuo Ohta, Shoji Yamaoka

published 19 Dec 2018

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Polymorphism analysis of the apxIA gene of Actinobacillus pleuropneumoniae serovar 5 isolated in swine herds from Brazil

Lucas Fernando dos Santos, Richard Costa Polveiro, Thalita Scatamburlo Moreira, Pedro Marcus Pereira Vidigal, Yung-Fu Chang, Maria Aparecida Scatamburlo Moreira

published 18 Dec 2018

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HIV-1 subtype diversity, transmission networks and transmitted drug resistance amongst acute and early infected MSM populations from Coastal Kenya

Amin S. Hassan, Joakim Esbjörnsson, Elizabeth Wahome, Alexander Thiong’o, George N. Makau, Mathew A. Price, Eduard J. Sanders

published 18 Dec 2018

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Whole genome sequencing of Moraxella bovoculi reveals high genetic diversity and evidence for interspecies recombination at multiple loci

Aaron M. Dickey, Gennie Schuller, J. Dustin Loy, Michael L. Clawson

published 17 Dec 2018

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The role of Pleistocene climate change in the genetic variability, distribution and demography of Proechimys cuvieri and P. guyannensis (Rodentia: Echimyidae) in northeastern Amazonia

Claudia Regina Silva, Camila Cherem Ribas, Maria Nazareth F. Da Silva, Rafael Nascimento Leite, François Catzeflis, Duke S. Rogers, Benoit De Thoisy

published 17 Dec 2018

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Evolutionary analysis of the Chikungunya virus epidemic in Mexico reveals intra-host mutational hotspots in the E1 protein

José Esteban Muñoz-Medina, Miguel Antonio Garcia-Knight, Alejandro Sanchez-Flores, Irma Eloísa Monroy-Muñoz, Ricardo Grande, Joakim Esbjörnsson, Clara Esperanza Santacruz-Tinoco, César Raúl González-Bonilla

published 14 Dec 2018

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A multigene typing system for human adenoviruses reveals a new genotype in a collection of Swedish clinical isolates

Győző László Kaján, Agnieszka Lipiec, Dániel Bartha, Annika Allard, Niklas Arnberg

published 14 Dec 2018

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Speciation in a biodiversity hotspot: Phylogenetic relationships, species delimitation, and divergence times of Patagonian ground frogs from the Eupsophus roseus group (Alsodidae)

Elkin Y. Suárez-Villota, Camila A. Quercia, Leila M. Díaz, Victoria Vera-Sovier, José J. Nuñez

published 13 Dec 2018

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Characterization of grapevine leafroll-associated virus 3 genetic variants and application towards RT-qPCR assay design

Alfredo Diaz-Lara, Vicki Klaassen, Kristian Stevens, Mysore R. Sudarshana, Adib Rowhani, Hans J. Maree, Kar Mun Chooi, Arnaud G. Blouin, Nuredin Habili, Yashu Song, Kamyar Aram, Kari Arnold, Monica L. Cooper, Lynn Wunderlich, Mark C. Battany, Larry J. Bettiga, Rhonda J. Smith, Rachelle Bester, Huogen Xiao, Baozhong Meng, John E. Preece, Deborah Golino, Maher Al Rwahnih

published 12 Dec 2018

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Decomposing the subclonal structure of tumors with two-way mixture models on copy number aberrations

An-Shun Tai, Chien-Hua Peng, Shih-Chi Peng, Wen-Ping Hsieh

published 12 Dec 2018

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De novo transcriptome assembly of the Chinese pearl barley, adlay, by full-length isoform and short-read RNA sequencing

Sang-Ho Kang, Jong-Yeol Lee, Tae-Ho Lee, Soo-Yun Park, Chang-Kug Kim

published 11 Dec 2018

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Genetic diversity of the enteroviruses detected from cerebrospinal fluid (CSF) samples of patients with suspected aseptic meningitis in northern West Bank, Palestine in 2017

Kamal Dumaidi, Amer Al-Jawabreh, Fekri Samarah, Areej Zraiqi, Dirgham Yaseen

published 10 Dec 2018

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De novo transcriptome sequencing and SSR markers development for Cedrela balansae C.DC., a native tree species of northwest Argentina

Susana L. Torales, Máximo Rivarola, Sergio Gonzalez, María Virginia Inza, María F. Pomponio, Paula Fernández, Cintia V. Acuña, Noga Zelener, Luis Fornés, H. Esteban Hopp, Norma B. Paniego, Susana N. Marcucci Poltri

published 07 Dec 2018

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