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Phylogenetic analysis

Phylodynamics of HIV-1 in Lymphoid and Non-Lymphoid Tissues Reveals a Central Role for the Thymus in Emergence of CXCR4-Using Quasispecies

Marco Salemi, Brant R. Burkhardt, [ ... ], Maureen M. Goodenow

Early Evolution of Ionotropic GABA Receptors and Selective Regimes Acting on the Mammalian-Specific Theta and Epsilon Subunits

Christopher J. Martyniuk, Stéphane Aris-Brosou, [ ... ], Vance L. Trudeau

Impedance-Matching Hearing in Paleozoic Reptiles: Evidence of Advanced Sensory Perception at an Early Stage of Amniote Evolution

Johannes Müller, Linda A. Tsuji

Degeneration of the Olfactory Guanylyl Cyclase D Gene during Primate Evolution

Janet M. Young, Hang Waters, [ ... ], Emily R. Liman

Dating Phylogenies with Hybrid Local Molecular Clocks

Stéphane Aris-Brosou

NetMHCpan, a Method for Quantitative Predictions of Peptide Binding to Any HLA-A and -B Locus Protein of Known Sequence

Morten Nielsen, Claus Lundegaard, [ ... ], Søren Buus

Patterns of Selection in Anti-Malarial Immune Genes in Malaria Vectors: Evidence for Adaptive Evolution in LRIM1 in Anopheles arabiensis

Michel A. Slotman, Aristeidis Parmakelis, [ ... ], Jeffrey R. Powell

Phylogenomics Reshuffles the Eukaryotic Supergroups

Fabien Burki, Kamran Shalchian-Tabrizi, [ ... ], Jan Pawlowski

Expressed Sequence Tags as a Tool for Phylogenetic Analysis of Placental Mammal Evolution

Morgan Kullberg, Björn Hallström, Ulfur Arnason, Axel Janke

Protistan Diversity in the Arctic: A Case of Paleoclimate Shaping Modern Biodiversity?

Thorsten Stoeck, Jennifer Kasper, [ ... ], Slava Epstein

Acoel Flatworms Are Not Platyhelminthes: Evidence from Phylogenomics

Hervé Philippe, Henner Brinkmann, [ ... ], Jaume Baguñà

Extensive Gains and Losses of Olfactory Receptor Genes in Mammalian Evolution

Yoshihito Niimura, Masatoshi Nei

A Framework for Exploring Functional Variability in Olfactory Receptor Genes

Orna Man, David C. Willhite, [ ... ], Yoav Gilad

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