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Phylogenetic analysis

Recombination and Population Mosaic of a Multifunctional Viral Gene, Adeno-Associated Virus cap

Yasuhiro Takeuchi, Richard Myers, Olivier Danos

Sequence Evidence in the Archaeal Genomes that tRNAs Emerged Through the Combination of Ancestral Genes as 5′ and 3′ tRNA Halves

Kosuke Fujishima, Junichi Sugahara, Masaru Tomita, Akio Kanai

The Effect of Inappropriate Calibration: Three Case Studies in Molecular Ecology

Simon Y. W. Ho, Urmas Saarma, [ ... ], Beth Shapiro

An Update on MyoD Evolution in Teleosts and a Proposed Consensus Nomenclature to Accommodate the Tetraploidization of Different Vertebrate Genomes

Daniel J. Macqueen, Ian A. Johnston

Evolution of a Complex Locus: Exon Gain, Loss and Divergence at the Gr39a Locus in Drosophila

Anastasia Gardiner, Daniel Barker, [ ... ], Michael G. Ritchie

Genome-Wide Survey and Developmental Expression Mapping of Zebrafish SET Domain-Containing Genes

Xiao-Jian Sun, Peng-Fei Xu, [ ... ], Zhu Chen

Natural Selection and Adaptive Evolution of Leptin in the Ochotona Family Driven by the Cold Environmental Stress

Jie Yang, Zhen Long Wang, [ ... ], Hui Fang Tian

Y-Chromosome Based Evidence for Pre-Neolithic Origin of the Genetically Homogeneous but Diverse Sardinian Population: Inference for Association Scans

Daniela Contu, Laura Morelli, [ ... ], Francesco Cucca

High-Resolution Molecular Epidemiology and Evolutionary History of HIV-1 Subtypes in Albania

Marco Salemi, Tulio de Oliveira, [ ... ], Maureen M. Goodenow

Whole-Gene Positive Selection, Elevated Synonymous Substitution Rates, Duplication, and Indel Evolution of the Chloroplast clpP1 Gene

Per Erixon, Bengt Oxelman

Genetic Evidence for a Mitochondriate Ancestry in the ‘Amitochondriate’ Flagellate Trimastix pyriformis

Vladimir Hampl, Jeffrey D. Silberman, [ ... ], Andrew J. Roger

Multi-Locus Sequence Typing of Bartonella henselae Isolates from Three Continents Reveals Hypervirulent and Feline-Associated Clones

Mardjan Arvand, Edward J. Feil, [ ... ], Juliane Viezens

Molecular Variation at a Candidate Gene Implicated in the Regulation of Fire Ant Social Behavior

Dietrich Gotzek, D. DeWayne Shoemaker, Kenneth G. Ross

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