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Phylogenetic analysis

Host-Associated and Free-Living Phage Communities Differ Profoundly in Phylogenetic Composition

J. Gregory Caporaso, Rob Knight, Scott T. Kelley

Emergence and Genetic Variation of Neuraminidase Stalk Deletions in Avian Influenza Viruses

Jinling Li, Heinrich zu Dohna, [ ... ], Tim E. Carpenter

Craniodental Morphology and Systematics of a New Family of Hystricognathous Rodents (Gaudeamuridae) from the Late Eocene and Early Oligocene of Egypt

Hesham M. Sallam, Erik R. Seiffert, Elwyn L. Simons

HIV-1 Molecular Epidemiology in Guinea-Bissau, West Africa: Origin, Demography and Migrations

Joakim Esbjörnsson, Mattias Mild, [ ... ], Patrik Medstrand

The Characterization of Helicobacter pylori DNA Associated with Ancient Human Remains Recovered from a Canadian Glacier

Treena Swanston, Monique Haakensen, Harry Deneer, Ernest G. Walker

Complex Evolutionary History of the Aeromonas veronii Group Revealed by Host Interaction and DNA Sequence Data

Adam C. Silver, David Williams, [ ... ], Joerg Graf

Sebacinales Everywhere: Previously Overlooked Ubiquitous Fungal Endophytes

Michael Weiß, Zuzana Sýkorová, [ ... ], Dirk Redecker

Genetically Depauperate in the Continent but Rich in Oceanic Islands: Cistus monspeliensis (Cistaceae) in the Canary Islands

Mario Fernández-Mazuecos, Pablo Vargas

Error and Error Mitigation in Low-Coverage Genome Assemblies

Melissa J. Hubisz, Michael F. Lin, Manolis Kellis, Adam Siepel

The Bryopsis hypnoides Plastid Genome: Multimeric Forms and Complete Nucleotide Sequence

Fang Lü, Wei Xü, [ ... ], Songnian Hu

Internal Transcribed Spacer 2 (nu ITS2 rRNA) Sequence-Structure Phylogenetics: Towards an Automated Reconstruction of the Green Algal Tree of Life

Mark A. Buchheim, Alexander Keller, [ ... ], Matthias Wolf

The Expansion of the PRAME Gene Family in Eutheria

Ti-Cheng Chang, Yang Yang, [ ... ], Wan-Sheng Liu

Next-Generation Sequencing Reveals Recent Horizontal Transfer of a DNA Transposon between Divergent Mosquitoes

Yupu Diao, Yumin Qi, [ ... ], Zhijian Jake Tu

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