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Phylogenetic analysis

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

Aaron E. Darling, Bob Mau, Nicole T. Perna

Geographic and Genetic Population Differentiation of the Amazonian Chocolate Tree (Theobroma cacao L)

Juan C. Motamayor, Philippe Lachenaud, [ ... ], Raymond J. Schnell

The Evolution of Mammalian Gene Families

Jeffery P. Demuth, Tijl De Bie, [ ... ], Matthew W. Hahn

Tyrant Dinosaur Evolution Tracks the Rise and Fall of Late Cretaceous Oceans

Mark A. Loewen, Randall B. Irmis, [ ... ], Scott D. Sampson

The Importance of Using Multiple Approaches for Identifying Emerging Invasive Species: The Case of the Rasberry Crazy Ant in the United States

Dietrich Gotzek, Seán G. Brady, Robert J. Kallal, John S. LaPolla

Stalking the Fourth Domain in Metagenomic Data: Searching for, Discovering, and Interpreting Novel, Deep Branches in Marker Gene Phylogenetic Trees

Dongying Wu, Martin Wu, [ ... ], Jonathan A. Eisen

A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy

Kjersti Aagaard, Kevin Riehle, [ ... ], James Versalovic

New Horned Dinosaurs from Utah Provide Evidence for Intracontinental Dinosaur Endemism

Scott D. Sampson, Mark A. Loewen, [ ... ], Alan L. Titus

Population Differentiation of Southern Indian Male Lineages Correlates with Agricultural Expansions Predating the Caste System

GaneshPrasad ArunKumar, David F. Soria-Hernanz, [ ... ], The Genographic Consortium

Insights into the Ecology and Evolutionary Success of Crocodilians Revealed through Bite-Force and Tooth-Pressure Experimentation

Gregory M. Erickson, Paul M. Gignac, [ ... ], Grahame J. W. Webb

Evolutionary History of Hunter-Gatherer Marriage Practices

Robert S. Walker, Kim R. Hill, Mark V. Flinn, Ryan M. Ellsworth

Repeated and Widespread Evolution of Bioluminescence in Marine Fishes

Matthew P. Davis, John S. Sparks, W. Leo Smith

Linguistic Phylogenies Support Back-Migration from Beringia to Asia

Mark A. Sicoli, Gary Holton

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