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Phylogenetic analysis

Methicillin-resistant Staphylococcus aureus (MRSA) infection in hospitalized patients is dominated by community-acquired strains: genomic epidemiological evidence

Jingxia Dang, Yuhui Geng, Ting Pan, Ping Zhang, Mingbo Chen, Dongfeng Pan, Peifeng Liang

published 30 Jul 2026

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First report of Corynespora cassiicola causing leaf spot on Begonia fimbristipula in China

Xiaobo Zhang, Xiaoyi Zuo, Jianhua Lu, Ya Xiao, Yuanshun Wang, Huan Chen, Yuting Zhang, Xun Lu

published 30 Jul 2026

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Dynamic transmission and evolutionary analysis of the HIV-1 subtype CRF01_AE pol region in Ningxia, China

Ziyang Luo, Wei Sun, Jianxin Pei, Subinuer Mutalifu, Youping Duan, Yufeng Li, Xiaohong Zhu, Zhonglan Wu

published 29 Jul 2026

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Computational analysis reveals historical trajectory of East Polynesian lunar calendars

Miguel Valério, Fabio Tamburini, Michele Corazza

published 29 Jul 2026

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Molecular diversity of deep-sea fishes (Actinopterygii: Teleostei) in the western South Atlantic: A high diversity and new findings revealed by DNA barcoding

Heloísa De Cia Caixeta, Claudio Oliveira, Marcelo Roberto Souto de Melo

published 14 Jul 2026

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Genomic surveillance of carbapenem-resistant Acinetobacter baumannii from bloodstream infections in Thailand reveals widespread dissemination of bla_NDM–harboring mobile genetic elements

Aekkawat Unahalekhaka, Kulsumpun Krobanan, Watcharaporn Kamjumphol, Phimrata Leethongdee, Yanisa Sukheephak, Patchaya Boonjan, Kasidet Thapaan, Wiphat Klayut, Orapan Sripichai, Nalumon Thadtapong, Chattip Kurehong, Kranokpron Moolwang, Donlaya Muanplueng, Warawan Wongboot, Pilailuk Akkapaiboon Okada, Jiraphan Premsuriya

published 13 Jul 2026

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Geographic and Orientia infection status influence on the bacterial microbiome of free-living chiggers in North Carolina, USA

Kaiying Chen, Nicholas V. Travanty, Reuben A. Garshong, Gideon Wasserberg, Charles S. Apperson, R. Michael Roe, Loganathan Ponnusamy

published 08 Jul 2026

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Integrative analyses reveal the evolution of the Old World Swallowtail in the Palearctic

Valentina Todisco, Jennifer F. Hoyal Cuthill, Anatoly Krupitsky, Galina Shapoval, Boris Nalitkin, Anna Romanovich, Raluca Vodă, Marko Mutanen, Roger Vila, Nazar Shapoval, Vazrick Nazari

published 08 Jul 2026

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Beyond traditional outbreak investigation: Using genomic data for enhanced detection of COVID-19 disease clusters in Utah

Mary Jewell, Abbey Marye, Bree Barbeau, Kelly Oakeson

published 08 Jul 2026

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Morphology and phylogeny of Avicennia marina (Forssk.) Vierh. in Iran

Farrokh Ghahremaninejad

published 07 Jul 2026

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Genetic structure of traditional cacao reveals four new genetic lineages in indigenous Amazonian sites in Peru

Lambert A. Motilal, Martha S. Calderon, Danilo E. Bustamante, David Gopaulchan, Daniel Tineo, Fanny R. Márquez-Romero, Sphyros Lastra, Jorge R. Diaz-Valderrama, Juan Carlos Guerrero-Abad, Manuel Oliva, Pathmanathan Umaharan

published 06 Jul 2026

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Siphonophore genome structure and the evolution of functional specialization

Namrata Ahuja, Darrin T. Schultz, Dalila Destanović, Samuel H. Church, Natasha Picciani, Catriona Munro, Koto Kon-Nanjo, Tetsuo Kon, Maciej K. Mańko, Wendy Shi, Oleg Simakov, Casey W. Dunn

published 02 Jul 2026

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Whole-genome sequencing reveals a previously unrecognized measles virus cluster in Burundi

Néhémie Nzoyikorera, David F. Nieuwenhuijse, Leonard Schuele, Cassien Nduwimana, Armstrong Ndihokubwayo, Théogène Ihorimbere, Denis Niyomwungere, Hayley Cassidy, Marjan Boter, Celestin Nibogora, Richard Molenkamp, Alexis Niyomwungere, Dionis Nizigiyimana, Marie Noelle Uwineza, Idrissa Diawara, Saria Otani, Rogier Bodewes, Frank M. Aarestrup, Marion Koopmans, Joseph Nyandwi, Bas B. Oude Munnink

published 30 Jun 2026

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