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Optimization

On the Adaptive Partition Approach to the Detection of Multiple Change-Points

Yinglei Lai

Multiparameter RNA and Codon Optimization: A Standardized Tool to Assess and Enhance Autologous Mammalian Gene Expression

Stephan Fath, Asli Petra Bauer, [ ... ], Ralf Wagner

From Lévy to Brownian: A Computational Model Based on Biological Fluctuation

Surya G. Nurzaman, Yoshio Matsumoto, [ ... ], Hiroshi Ishiguro

Optimal Homogenization of Perfusion Flows in Microfluidic Bio-Reactors: A Numerical Study

Fridolin Okkels, Martin Dufva, Henrik Bruus

Consistent Robustness Analysis (CRA) Identifies Biologically Relevant Properties of Regulatory Network Models

Treenut Saithong, Kevin J. Painter, Andrew J. Millar

Redrawing the Map of Great Britain from a Network of Human Interactions

Carlo Ratti, Stanislav Sobolevsky, [ ... ], Steven H. Strogatz

Use of Spatial Information and Search Strategies in a Water Maze Analog in Drosophila melanogaster

Julien Foucaud, James G. Burns, Frederic Mery

Hierarchical Clustering Using the Arithmetic-Harmonic Cut: Complexity and Experiments

Romeo Rizzi, Pritha Mahata, Luke Mathieson, Pablo Moscato

The Contributions of Interlocking Loops and Extensive Nonlinearity to the Properties of Circadian Clock Models

Treenut Saithong, Kevin J. Painter, Andrew J. Millar

Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models

Mattia C. F. Prosperi, Michal Rosen-Zvi, [ ... ], for the EuResist and Virolab study groups

When the Optimal Is Not the Best: Parameter Estimation in Complex Biological Models

Diego Fernández Slezak, Cecilia Suárez, [ ... ], Gustavo Stolovitzky

Prediction of Optimal Folding Routes of Proteins That Satisfy the Principle of Lowest Entropy Loss: Dynamic Contact Maps and Optimal Control

Yaman Arkun, Burak Erman

A Mechanistic Model of PCR for Accurate Quantification of Quantitative PCR Data

Gregory J. Boggy, Peter J. Woolf

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