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Open source software

mMass as a Software Tool for the Annotation of Cyclic Peptide Tandem Mass Spectra

Timo H. J. Niedermeyer, Martin Strohalm

published 13 Sep 2012

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mMWeb - An Online Platform for Employing Multiple Ecological Niche Modeling Algorithms

Huijie Qiao, Congtian Lin, Liqiang Ji, Zhigang Jiang

published 17 Aug 2012

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Measuring the Distribution of Spitefulness

Erik O. Kimbrough, J. Philipp Reiss

published 15 Aug 2012

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Open Source Tracking and Analysis of Adult Drosophila Locomotion in Buridan's Paradigm with and without Visual Targets

Julien Colomb, Lutz Reiter, Jedrzej Blaszkiewicz, Jan Wessnitzer, Bjoern Brembs

published 09 Aug 2012

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CACTI: Free, Open-Source Software for the Sequential Coding of Behavioral Interactions

Lisa H. Glynn, Kevin A. Hallgren, Jon M. Houck, Theresa B. Moyers

published 16 Jul 2012

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TrakEM2 Software for Neural Circuit Reconstruction

Albert Cardona, Stephan Saalfeld, Johannes Schindelin, Ignacio Arganda-Carreras, Stephan Preibisch, Mark Longair, Pavel Tomancak, Volker Hartenstein, Rodney J. Douglas

published 19 Jun 2012

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mPSQed: A Software for the Design of Multiplex Pyrosequencing Assays

Piotr Wojtek Dabrowski, Andreas Nitsche

published 04 Jun 2012

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NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

Ravi K. Patel, Mukesh Jain

published 01 Feb 2012

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Python as a Federation Tool for GENESIS 3.0

Hugo Cornelis, Armando L. Rodriguez, Allan D. Coop, James M. Bower

published 20 Jan 2012

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Predicting Peptide Binding Affinities to MHC Molecules Using a Modified Semi-Empirical Scoring Function

Webber W. P. Liao, Jonathan W. Arthur

published 22 Sep 2011

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REST: A Toolkit for Resting-State Functional Magnetic Resonance Imaging Data Processing

Xiao-Wei Song, Zhang-Ye Dong, Xiang-Yu Long, Su-Fang Li, Xi-Nian Zuo, Chao-Zhe Zhu, Yong He, Chao-Gan Yan, Yu-Feng Zang

published 20 Sep 2011

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CDinFusion – Submission-Ready, On-Line Integration of Sequence and Contextual Data

Wolfgang Hankeln, Norma Johanna Wendel, Jan Gerken, Jost Waldmann, Pier Luigi Buttigieg, Ivaylo Kostadinov, Renzo Kottmann, Pelin Yilmaz, Frank Oliver Glöckner

published 13 Sep 2011

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The 2010 Rosetta Developers Meeting: Macromolecular Prediction and Design Meets Reproducible Publishing

P. Douglas Renfrew, Gabrielle Campbell, Charlie E. M. Strauss, Richard Bonneau

published 31 Aug 2011

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