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Open source software

mPSQed: A Software for the Design of Multiplex Pyrosequencing Assays

Piotr Wojtek Dabrowski, Andreas Nitsche

published 04 Jun 2012

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NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

Ravi K. Patel, Mukesh Jain

published 01 Feb 2012

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Python as a Federation Tool for GENESIS 3.0

Hugo Cornelis, Armando L. Rodriguez, Allan D. Coop, James M. Bower

published 20 Jan 2012

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Predicting Peptide Binding Affinities to MHC Molecules Using a Modified Semi-Empirical Scoring Function

Webber W. P. Liao, Jonathan W. Arthur

published 22 Sep 2011

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REST: A Toolkit for Resting-State Functional Magnetic Resonance Imaging Data Processing

Xiao-Wei Song, Zhang-Ye Dong, Xiang-Yu Long, Su-Fang Li, Xi-Nian Zuo, Chao-Zhe Zhu, Yong He, Chao-Gan Yan, Yu-Feng Zang

published 20 Sep 2011

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CDinFusion – Submission-Ready, On-Line Integration of Sequence and Contextual Data

Wolfgang Hankeln, Norma Johanna Wendel, Jan Gerken, Jost Waldmann, Pier Luigi Buttigieg, Ivaylo Kostadinov, Renzo Kottmann, Pelin Yilmaz, Frank Oliver Glöckner

published 13 Sep 2011

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The 2010 Rosetta Developers Meeting: Macromolecular Prediction and Design Meets Reproducible Publishing

P. Douglas Renfrew, Gabrielle Campbell, Charlie E. M. Strauss, Richard Bonneau

published 31 Aug 2011

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Using Interpolation to Estimate System Uncertainty in Gene Expression Experiments

Lee J. Falin, Brett M. Tyler

published 22 Jul 2011

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Integrated Management and Visualization of Electronic Tag Data with Tagbase

Chi Hin Lam, Vardis M. Tsontos

published 05 Jul 2011

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Rapid Analysis of Vessel Elements (RAVE): A Tool for Studying Physiologic, Pathologic and Tumor Angiogenesis

Marc E. Seaman, Shayn M. Peirce, Kimberly Kelly

published 09 Jun 2011

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ALG: Automated Genotype Calling of Luminex Assays

Mathieu Bourgey, Mathieu Lariviere, Chantal Richer, Daniel Sinnett

published 06 May 2011

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The Ciliate Paramecium Shows Higher Motility in Non-Uniform Chemical Landscapes

Carl Giuffre, Peter Hinow, Ryan Vogel, Tanvir Ahmed, Roman Stocker, Thomas R. Consi, J. Rudi Strickler

published 11 Apr 2011

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A Java Program for LRE-Based Real-Time qPCR that Enables Large-Scale Absolute Quantification

Robert G. Rutledge

published 02 Mar 2011

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