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Open source software

REST: A Toolkit for Resting-State Functional Magnetic Resonance Imaging Data Processing

Xiao-Wei Song, Zhang-Ye Dong, Xiang-Yu Long, Su-Fang Li, Xi-Nian Zuo, Chao-Zhe Zhu, Yong He, Chao-Gan Yan, Yu-Feng Zang

published 20 Sep 2011

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CDinFusion – Submission-Ready, On-Line Integration of Sequence and Contextual Data

Wolfgang Hankeln, Norma Johanna Wendel, Jan Gerken, Jost Waldmann, Pier Luigi Buttigieg, Ivaylo Kostadinov, Renzo Kottmann, Pelin Yilmaz, Frank Oliver Glöckner

published 13 Sep 2011

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The 2010 Rosetta Developers Meeting: Macromolecular Prediction and Design Meets Reproducible Publishing

P. Douglas Renfrew, Gabrielle Campbell, Charlie E. M. Strauss, Richard Bonneau

published 31 Aug 2011

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Using Interpolation to Estimate System Uncertainty in Gene Expression Experiments

Lee J. Falin, Brett M. Tyler

published 22 Jul 2011

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Integrated Management and Visualization of Electronic Tag Data with Tagbase

Chi Hin Lam, Vardis M. Tsontos

published 05 Jul 2011

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Rapid Analysis of Vessel Elements (RAVE): A Tool for Studying Physiologic, Pathologic and Tumor Angiogenesis

Marc E. Seaman, Shayn M. Peirce, Kimberly Kelly

published 09 Jun 2011

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ALG: Automated Genotype Calling of Luminex Assays

Mathieu Bourgey, Mathieu Lariviere, Chantal Richer, Daniel Sinnett

published 06 May 2011

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The Ciliate Paramecium Shows Higher Motility in Non-Uniform Chemical Landscapes

Carl Giuffre, Peter Hinow, Ryan Vogel, Tanvir Ahmed, Roman Stocker, Thomas R. Consi, J. Rudi Strickler

published 11 Apr 2011

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A Java Program for LRE-Based Real-Time qPCR that Enables Large-Scale Absolute Quantification

Robert G. Rutledge

published 02 Mar 2011

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Image Enhancement for Tracking the Translucent Larvae of Drosophila melanogaster

Sukant Khurana, Wen-Ke Li, Nigel S. Atkinson

published 30 Dec 2010

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JULIDE: A Software Tool for 3D Reconstruction and Statistical Analysis of Autoradiographic Mouse Brain Sections

Delphine Ribes, Julia Parafita, Rémi Charrier, Fulvio Magara, Pierre J. Magistretti, Jean-Philippe Thiran

published 23 Nov 2010

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Superpose3D: A Local Structural Comparison Program That Allows for User-Defined Structure Representations

Pier Federico Gherardini, Gabriele Ausiello, Manuela Helmer-Citterich

published 05 Aug 2010

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Evaluation of Algorithm Performance in ChIP-Seq Peak Detection

Elizabeth G. Wilbanks, Marc T. Facciotti

published 08 Jul 2010

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