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Open source software

WormSizer: High-throughput Analysis of Nematode Size and Shape

Brad T. Moore, James M. Jordan, L. Ryan Baugh

published 22 Feb 2013

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OpenCFU, a New Free and Open-Source Software to Count Cell Colonies and Other Circular Objects

Quentin Geissmann

published 15 Feb 2013

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The Connectome Mapper: An Open-Source Processing Pipeline to Map Connectomes with MRI

Alessandro Daducci, Stephan Gerhard, Alessandra Griffa, Alia Lemkaddem, Leila Cammoun, Xavier Gigandet, Reto Meuli, Patric Hagmann, Jean-Philippe Thiran

published 18 Dec 2012

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Pituitary Adenoma Volumetry with 3D Slicer

Jan Egger, Tina Kapur, Christopher Nimsky, Ron Kikinis

published 11 Dec 2012

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Tract Profiles of White Matter Properties: Automating Fiber-Tract Quantification

Jason D. Yeatman, Robert F. Dougherty, Nathaniel J. Myall, Brian A. Wandell, Heidi M. Feldman

published 14 Nov 2012

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MetaSee: An Interactive and Extendable Visualization Toolbox for Metagenomic Sample Analysis and Comparison

Baoxing Song, Xiaoquan Su, Jian Xu, Kang Ning

published 08 Nov 2012

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GlycReSoft: A Software Package for Automated Recognition of Glycans from LC/MS Data

Evan Maxwell, Yan Tan, Yuxiang Tan, Han Hu, Gary Benson, Konstantin Aizikov, Shannon Conley, Gregory O. Staples, Gordon W. Slysz, Richard D. Smith, Joseph Zaia

published 26 Sep 2012

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FragIt: A Tool to Prepare Input Files for Fragment Based Quantum Chemical Calculations

Casper Steinmann, Mikael W. Ibsen, Anne S. Hansen, Jan H. Jensen

published 18 Sep 2012

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mMass as a Software Tool for the Annotation of Cyclic Peptide Tandem Mass Spectra

Timo H. J. Niedermeyer, Martin Strohalm

published 13 Sep 2012

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mMWeb - An Online Platform for Employing Multiple Ecological Niche Modeling Algorithms

Huijie Qiao, Congtian Lin, Liqiang Ji, Zhigang Jiang

published 17 Aug 2012

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Measuring the Distribution of Spitefulness

Erik O. Kimbrough, J. Philipp Reiss

published 15 Aug 2012

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Open Source Tracking and Analysis of Adult Drosophila Locomotion in Buridan's Paradigm with and without Visual Targets

Julien Colomb, Lutz Reiter, Jedrzej Blaszkiewicz, Jan Wessnitzer, Bjoern Brembs

published 09 Aug 2012

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CACTI: Free, Open-Source Software for the Sequential Coding of Behavioral Interactions

Lisa H. Glynn, Kevin A. Hallgren, Jon M. Houck, Theresa B. Moyers

published 16 Jul 2012

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