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Open source software

MetaSee: An Interactive and Extendable Visualization Toolbox for Metagenomic Sample Analysis and Comparison

Baoxing Song, Xiaoquan Su, Jian Xu, Kang Ning

published 08 Nov 2012

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GlycReSoft: A Software Package for Automated Recognition of Glycans from LC/MS Data

Evan Maxwell, Yan Tan, Yuxiang Tan, Han Hu, Gary Benson, Konstantin Aizikov, Shannon Conley, Gregory O. Staples, Gordon W. Slysz, Richard D. Smith, Joseph Zaia

published 26 Sep 2012

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FragIt: A Tool to Prepare Input Files for Fragment Based Quantum Chemical Calculations

Casper Steinmann, Mikael W. Ibsen, Anne S. Hansen, Jan H. Jensen

published 18 Sep 2012

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mMass as a Software Tool for the Annotation of Cyclic Peptide Tandem Mass Spectra

Timo H. J. Niedermeyer, Martin Strohalm

published 13 Sep 2012

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mMWeb - An Online Platform for Employing Multiple Ecological Niche Modeling Algorithms

Huijie Qiao, Congtian Lin, Liqiang Ji, Zhigang Jiang

published 17 Aug 2012

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Measuring the Distribution of Spitefulness

Erik O. Kimbrough, J. Philipp Reiss

published 15 Aug 2012

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Open Source Tracking and Analysis of Adult Drosophila Locomotion in Buridan's Paradigm with and without Visual Targets

Julien Colomb, Lutz Reiter, Jedrzej Blaszkiewicz, Jan Wessnitzer, Bjoern Brembs

published 09 Aug 2012

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CACTI: Free, Open-Source Software for the Sequential Coding of Behavioral Interactions

Lisa H. Glynn, Kevin A. Hallgren, Jon M. Houck, Theresa B. Moyers

published 16 Jul 2012

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TrakEM2 Software for Neural Circuit Reconstruction

Albert Cardona, Stephan Saalfeld, Johannes Schindelin, Ignacio Arganda-Carreras, Stephan Preibisch, Mark Longair, Pavel Tomancak, Volker Hartenstein, Rodney J. Douglas

published 19 Jun 2012

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mPSQed: A Software for the Design of Multiplex Pyrosequencing Assays

Piotr Wojtek Dabrowski, Andreas Nitsche

published 04 Jun 2012

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NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

Ravi K. Patel, Mukesh Jain

published 01 Feb 2012

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Python as a Federation Tool for GENESIS 3.0

Hugo Cornelis, Armando L. Rodriguez, Allan D. Coop, James M. Bower

published 20 Jan 2012

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Predicting Peptide Binding Affinities to MHC Molecules Using a Modified Semi-Empirical Scoring Function

Webber W. P. Liao, Jonathan W. Arthur

published 22 Sep 2011

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