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Open source software

OpenCFU, a New Free and Open-Source Software to Count Cell Colonies and Other Circular Objects

Quentin Geissmann

The Connectome Mapper: An Open-Source Processing Pipeline to Map Connectomes with MRI

Alessandro Daducci, Stephan Gerhard, [ ... ], Jean-Philippe Thiran

Pituitary Adenoma Volumetry with 3D Slicer

Jan Egger, Tina Kapur, Christopher Nimsky, Ron Kikinis

Tract Profiles of White Matter Properties: Automating Fiber-Tract Quantification

Jason D. Yeatman, Robert F. Dougherty, [ ... ], Heidi M. Feldman

MetaSee: An Interactive and Extendable Visualization Toolbox for Metagenomic Sample Analysis and Comparison

Baoxing Song, Xiaoquan Su, Jian Xu, Kang Ning

GlycReSoft: A Software Package for Automated Recognition of Glycans from LC/MS Data

Evan Maxwell, Yan Tan, [ ... ], Joseph Zaia

FragIt: A Tool to Prepare Input Files for Fragment Based Quantum Chemical Calculations

Casper Steinmann, Mikael W. Ibsen, Anne S. Hansen, Jan H. Jensen

mMass as a Software Tool for the Annotation of Cyclic Peptide Tandem Mass Spectra

Timo H. J. Niedermeyer, Martin Strohalm

mMWeb - An Online Platform for Employing Multiple Ecological Niche Modeling Algorithms

Huijie Qiao, Congtian Lin, Liqiang Ji, Zhigang Jiang

Measuring the Distribution of Spitefulness

Erik O. Kimbrough, J. Philipp Reiss

Open Source Tracking and Analysis of Adult Drosophila Locomotion in Buridan's Paradigm with and without Visual Targets

Julien Colomb, Lutz Reiter, [ ... ], Bjoern Brembs

CACTI: Free, Open-Source Software for the Sequential Coding of Behavioral Interactions

Lisa H. Glynn, Kevin A. Hallgren, Jon M. Houck, Theresa B. Moyers

TrakEM2 Software for Neural Circuit Reconstruction

Albert Cardona, Stephan Saalfeld, [ ... ], Rodney J. Douglas

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