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Open source software

Message in a bottle: Open source technology to track the movement of plastic pollution

Emily M. Duncan, Alasdair Davies, [ ... ], Heather Koldewey

DeepNano: Deep recurrent neural networks for base calling in MinION nanopore reads

Vladimír Boža, Broňa Brejová, Tomáš Vinař

Open Source Tracking and Analysis of Adult Drosophila Locomotion in Buridan's Paradigm with and without Visual Targets

Julien Colomb, Lutz Reiter, [ ... ], Bjoern Brembs

BEEtag: A Low-Cost, Image-Based Tracking System for the Study of Animal Behavior and Locomotion

James D. Crall, Nick Gravish, Andrew M. Mountcastle, Stacey A. Combes

The Connectome Mapper: An Open-Source Processing Pipeline to Map Connectomes with MRI

Alessandro Daducci, Stephan Gerhard, [ ... ], Jean-Philippe Thiran

3D Tune-In Toolkit: An open-source library for real-time binaural spatialisation

María Cuevas-Rodríguez, Lorenzo Picinali, [ ... ], Arcadio Reyes-Lecuona

Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome

Daniel Garijo, Sarah Kinnings, [ ... ], Yolanda Gil

An Automated Image Analysis System to Measure and Count Organisms in Laboratory Microcosms

François Mallard, Vincent Le Bourlot, Thomas Tully

STORMSeq: An Open-Source, User-Friendly Pipeline for Processing Personal Genomics Data in the Cloud

Konrad J. Karczewski, Guy Haskin Fernald, [ ... ], Joel T. Dudley

A method for rapid 3D scanning and replication of large paleontological specimens

Anshuman J. Das, Denise C. Murmann, Kenneth Cohrn, Ramesh Raskar

3D Forest: An application for descriptions of three-dimensional forest structures using terrestrial LiDAR

Jan Trochta, Martin Krůček, Tomáš Vrška, Kamil Král

Cheburator Software for Automatically Calculating Drug Inhibitory Concentrations from In Vitro Screening Assays

Dmitry Nevozhay

mMass as a Software Tool for the Annotation of Cyclic Peptide Tandem Mass Spectra

Timo H. J. Niedermeyer, Martin Strohalm

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